| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,526,304 – 3,526,415 |
| Length | 111 |
| Max. P | 0.506440 |
| Location | 3,526,304 – 3,526,415 |
|---|---|
| Length | 111 |
| Sequences | 13 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 74.61 |
| Shannon entropy | 0.57192 |
| G+C content | 0.54678 |
| Mean single sequence MFE | -36.91 |
| Consensus MFE | -13.87 |
| Energy contribution | -13.97 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3526304 111 + 21146708 -------CUCCGAUCUGGCCAAUGGAAACGGGCUGAAGCGGCGCCAUCGCACCGAGCACUACUUCGAGCCGAAGAUCUACCAGGAUCUGUUGGCCACAGCGGUGCUAAAUAAGGUAAG -------..(((...(((((((((....).((((((((..(.((..(((...))))).)..)))).))))..((((((....))))))))))))))...)))((((......)))).. ( -40.30, z-score = -1.87, R) >droSim1.chr2R 2252661 111 + 19596830 -------CUCCGAGCUGGCCAAUGGCAACGGUCUGAAGCGGCGCCAUCGCACCGAGCACUACUUCGAGCCGAAGAUCUACAAGGAUCUGCUGGCCACAGCGGUGCUAAAUAAGGUAAG -------..(((...((((((...((..(((..(((((..(.((..(((...))))).)..)))))..))).((((((....))))))))))))))...)))((((......)))).. ( -39.00, z-score = -1.12, R) >droSec1.super_1 1183254 111 + 14215200 -------CUCCGAGCUGGCCAAUGGCAACGGUCUGAAGCGGCGCCAUCGCACCGAGCACUACUUCGAGCCGAAGAUCUACCAGGAUCUGCUGGCCACAGCGGUGCUAAAUAAGGUAAG -------..(((...((((((...((..(((..(((((..(.((..(((...))))).)..)))))..))).((((((....))))))))))))))...)))((((......)))).. ( -39.00, z-score = -0.93, R) >droYak2.chr2L 16198060 111 + 22324452 -------GUCCGAGCUGGCCAACGGAAACGGGCUGAAGCGGCGCCAUCGCACCGAGCACUACUUCGAGCCGAAGAUCUAUCAGGAUCUGCUGGCCACAGCGGUGCUAAAUAAGGUAAG -------..(((...((((((.((....))((((((((..(.((..(((...))))).)..)))).))))..((((((....))))))..))))))...)))((((......)))).. ( -40.50, z-score = -1.29, R) >droEre2.scaffold_4929 7563096 111 - 26641161 -------CUCCGAGCUGGCCAACGGAAACGGGCUGAAGCGGCGCCAUCGCACCGAGCACUACUUCGAGCCGAAGGUCUACCAGGAUCUGCUGGCCACAGCGGUGCUAAAUAAGGUAAG -------..(((...((((((.((....))((((((((..(.((..(((...))))).)..)))).))))..((((((....))))))..))))))...)))((((......)))).. ( -39.90, z-score = -0.73, R) >droAna3.scaffold_13266 10039390 111 + 19884421 -------CUCGGAGCUGGCCAAUGGAAAUGGCCUAAAGCGGCGCCACCGCACUGAGCACUACUUUGAGCCAAAGAUCUACCAGGAUCUGCUGGCCACGGCGGUGCUAAAUAAGGUAAG -------...((.((((((((.(....))))))......))).))(((......(((((..((.((.((((.((((((....))))))..)))))).))..)))))......)))... ( -42.60, z-score = -2.24, R) >dp4.chr3 7553425 114 - 19779522 ----CGCCGAGCUGCCGAACAAUGGGAAUGGGCUGAAGCGCCGACAUCGCACGGAGCACUACUUCGAGCCGAAGAUCUAUCAGGAUCUGCUGGCCACAGCGGUGCUCAAUAAGGUGAG ----((((.((((.((........))....))))((.(((((....((((.(((((.....))))).).)))((((((....))))))((((....))))))))))).....)))).. ( -39.20, z-score = -0.56, R) >droPer1.super_44 205152 114 - 614636 ----CGCCGAGCUGCCGAACAAAGGGAAUGGGCUGAAGCGCCGACAUCGCACGGAGCACUACUUCGAGCCGAAGAUCUAUCAGGAUCUGCUGGCCACAGCGGUGCUCAAUAAGGUAAG ----.(((.(..(.((.......)).).).)))(((.(((((....((((.(((((.....))))).).)))((((((....))))))((((....)))))))))))).......... ( -37.50, z-score = -0.40, R) >droWil1.scaffold_180569 1230282 101 - 1405142 ---------UCCGAAUUGAA--------UGCCCUCAAGCAACGUCAUCGGACCGAGCAUUAUUUUGAGCCAAAAAUCUAUCAGGAUCUAUUGGCCACAGCGGUGCUAAAUAAGGUAAG ---------.((((..(((.--------(((......)))...)))))))(((.(((((..((.((.(((((..((((....))))...))))))).))..)))))......)))... ( -27.30, z-score = -2.02, R) >droVir3.scaffold_12875 14585035 115 + 20611582 UGCCGGGCUUCAGCAAUGGCGGCAG---CAACAGCAAGCGACGCCAUCGCACCGAGCACUAUUUUGAGCCCAAAAUCUAUCAGGAUCUGUUGGCCACAGCGGUGCUCAAUAAGGUAAG ((((((((((..((.((((((...(---(........))..)))))).))...)))).))...((((((((...((((....))))..((((....)))))).))))))...)))).. ( -39.60, z-score = -1.42, R) >droMoj3.scaffold_6496 10061388 118 + 26866924 UAUCGGGCUUUCAUAAUAACAACAAUAACAACAACAAGAGACGCCAUCGCACCGAACACUAUUUCGAGCCAAAAAUCUAUCAGGAUCUAUUGGCCACAGCGGUGCUGAAUAAGGUAAG ((((.(((((((.........................)))).))).((((((((((......)))(.(((((..((((....))))...)))))).....))))).))....)))).. ( -24.91, z-score = -1.98, R) >droGri2.scaffold_15245 14590489 109 + 18325388 UGUCGAGCUUUAGUAAUGGC---------AACAUCAAGAGACGCCACCGCACCGAGCACUAUUUUGAGCCCAAAAUCUAUCAGGAUCUUUUGGCCACAGCGGUGCUCAAUAAGGUAAG ......((((((((..((((---------..(.......)..))))..))...((((((..((.((.(((.(((((((....)))).))).))))).))..))))))..))))))... ( -30.20, z-score = -1.76, R) >anoGam1.chr2L 21838730 93 + 48795086 ---------------UGGCCUUCCGCUACGGCCGGAAGAG----CAUC-UGCCG-----UACUUCGAUCCGAAGAAGUACGAGCAGCUGUUGGCCACUGCGGUACUGAACAAGGUAAG ---------------(((((((((((....).))))).((----((.(-(((((-----((((((........)))))))).)))).)))))))))......((((......)))).. ( -39.80, z-score = -3.49, R) >consensus _______CUCCGAGCUGGCCAACGGAAACGGCCUGAAGCGGCGCCAUCGCACCGAGCACUACUUCGAGCCGAAGAUCUAUCAGGAUCUGCUGGCCACAGCGGUGCUAAAUAAGGUAAG .............................................(((......(((((..((..(.((((...((((....))))....)))))..))..)))))......)))... (-13.87 = -13.97 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:04 2011