| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,522,873 – 3,522,967 |
| Length | 94 |
| Max. P | 0.993787 |
| Location | 3,522,873 – 3,522,967 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 77.40 |
| Shannon entropy | 0.44525 |
| G+C content | 0.39012 |
| Mean single sequence MFE | -23.71 |
| Consensus MFE | -19.65 |
| Energy contribution | -19.51 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.64 |
| SVM RNA-class probability | 0.993787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3522873 94 + 21146708 UACUUUUAGGCAAGCUUUCAGGUGAGAGCUUGCUGAAAAGACUUUCUGUCU--GCUGUUUGUUUU---GUUUGCUCAUUAACCGAUAUUUGCACCCCUA ..(((((.(((((((((((....))))))))))).))))).......(..(--((((((.(((.(---(......))..))).))))...)))..)... ( -24.50, z-score = -1.71, R) >droSim1.chr2R 2248073 94 + 19596830 UACUUUUAGGCAAGCUUUCAGGUGAGAGCUUGCUGAAAAGACUUUCUGCCU--CCUGUUUGUUUU---GUUUGCUCAUUAACCGAUAUUUGCACCCCUA ..(((((.(((((((((((....))))))))))).)))))......(((..--..((((.(((.(---(......))..))).))))...)))...... ( -24.70, z-score = -2.18, R) >droSec1.super_1 1179836 94 + 14215200 UACUUUUAGGCAAGCUUUCAGGUGAGAGCUUGCUGAAAAUACUUUCUGCCU--CCUGUUUGUUUU---GUUUGCUCAUUAACCGAUAUUUGCACCCCUA ...((((.(((((((((((....))))))))))).)))).......(((..--..((((.(((.(---(......))..))).))))...)))...... ( -21.20, z-score = -1.48, R) >droYak2.chr2L 16195019 89 + 22324452 UACUUUUAGGCAAGCUUUCAGGUGAGAGCUUGCUGAAAAGACUUUCUGUCU--AU--UUAGUUUU---GUUUGCUCAUUAACCGAUAUUUGCACCC--- .........(((((...((.(((..((((..((((((.((((.....))))--.)--)))))...---....))))....)))))..)))))....--- ( -22.50, z-score = -1.79, R) >droEre2.scaffold_4929 7559909 89 - 26641161 UACUUUUAGGCAAGCUUUCAGGUGAGAGCUUGCCGAAAAGACUUUCUGUCU--AU--UUUGUUUU---GUUUGCUCAUUAACCGAUAUUUGCACCC--- ........(((((((((((....)))))))))))((((((((.....))))--.)--))).....---...(((..((........))..)))...--- ( -24.30, z-score = -2.74, R) >droAna3.scaffold_13266 10036304 95 + 19884421 UACUUUUAGGCGAGCUUUCGUGAGGGAGCUUGCUGGAAAGUCUUUCUGUGUUGCCAUUUUGUGUU---GUUCGCUCAUUAACAAAUAUUUGCACACCU- .((((((.((((((((..(....)..)))))))).)))))).....(((((......(((((..(---(......))...))))).....)))))...- ( -32.70, z-score = -3.62, R) >droWil1.scaffold_180569 1226846 90 - 1405142 GGUUUUUGCGUUAGCUU------AAAAGCUAACAUAAAAGUUUGUUUAAUUACCAAUUUCGUUUUUAUGUUCAUGCAUUAACUAAACGUCGCACAC--- ((((..((((((((((.------...)))))))....(((((.((......)).)))))...............)))..)))).............--- ( -16.10, z-score = -1.22, R) >consensus UACUUUUAGGCAAGCUUUCAGGUGAGAGCUUGCUGAAAAGACUUUCUGUCU__CCUGUUUGUUUU___GUUUGCUCAUUAACCGAUAUUUGCACCCCU_ ..(((((.(((((((((((....))))))))))).)))))........................................................... (-19.65 = -19.51 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:06:03 2011