| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,492,065 – 3,492,160 |
| Length | 95 |
| Max. P | 0.769450 |
| Location | 3,492,065 – 3,492,160 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 71.19 |
| Shannon entropy | 0.48964 |
| G+C content | 0.37803 |
| Mean single sequence MFE | -25.40 |
| Consensus MFE | -12.23 |
| Energy contribution | -12.70 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.769450 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3492065 95 + 21146708 ---------AACUUUUCGGCUUGCAUGGCAUUGAAA-GUACAAAACGCUUUGAUGCCCUGCUUUAUUUGUAU---UUUUCAGUUUUCAGUUAAAGCACGUGUAUGCAC------------ ---------.........((.((((((((((..((.-((.....))..))..))))).(((((((.(((...---...........))).))))))).))))).))..------------ ( -23.54, z-score = -1.43, R) >droSim1.chr2R 2222093 95 + 19596830 ---------AACUUUUCGGCUUGCAUGGCAUUGAAA-GUACAAAACGCUUUGAUGCCGUGCUUUAUUUGUAU---UUUUCAGUUUUCAGUUAAAGCACGUGUAUGCAC------------ ---------.........((.((((((((((..((.-((.....))..))..)))))((((((((.(((...---...........))).))))))))))))).))..------------ ( -28.54, z-score = -2.85, R) >droSec1.super_1 1154684 95 + 14215200 ---------AACUUUUCGGCUUGCAUGGCAUUGAAA-GUACAAAUCGCUUUGAUGCCGUGCUUUAUUUGUAU---UUUUCAGUUUUCAGUUAAAGCACGUGUAUGCAC------------ ---------.........((.(((((((((((.(((-((.......)))))))))))((((((((.(((...---...........))).))))))))))))).))..------------ ( -28.34, z-score = -2.98, R) >droEre2.scaffold_4929 7534543 88 - 26641161 ---------AACUUUUCGGCUGGCAUGGCAUUGAAA-GUACAAAACGCUUUGAUGCCGUGCUUUAUUUGUGU---GUUUCACUU-------AAAGCACGUGUAUGCAC------------ ---------.........((..(((((((((..((.-((.....))..))..)))))((((((((...(((.---....))).)-------)))))))))))..))..------------ ( -29.30, z-score = -2.81, R) >droAna3.scaffold_13266 10012074 119 + 19884421 CUGCCUGACAACUUUUUGGCUUGCAUGGCAUUGAAA-AAACAAAACCCUUUGAUGCCGUUUUUUAUGGCUAUGCAUUUUUAGUUUUUGUUUUUAGUUUAAACACACAUGGAUGUCAGCAC .(((.(((((.((...((...((((((((....(((-((((................)))))))...))))))))...........(((((.......)))))..)).)).)))))))). ( -26.99, z-score = -0.96, R) >dp4.chr3 7527992 103 - 19779522 CUGGCUGACAACAUUUUGGUAUGCAUGGCAUUGAAACACACAAAACGCUUUGAAGUC-UUUCUUAUUUAUUU----GUUUGGGUUUCAUGAACAUACAAUAUAUGCAC------------ ...((...(((....)))((((((((((.(((.(((((..((((....))))(((..-...))).......)----)))).))).)))))..))))).......))..------------ ( -15.70, z-score = 0.75, R) >consensus _________AACUUUUCGGCUUGCAUGGCAUUGAAA_GUACAAAACGCUUUGAUGCCGUGCUUUAUUUGUAU___UUUUCAGUUUUCAGUUAAAGCACGUGUAUGCAC____________ ......................(((((((((..((.............))..)))))))))........................................................... (-12.23 = -12.70 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:59 2011