Locus 3210

Sequence ID dm3.chr2R
Location 3,441,839 – 3,441,930
Length 91
Max. P 0.718554
window4412

overview

Window 2

Location 3,441,839 – 3,441,930
Length 91
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 75.90
Shannon entropy 0.38198
G+C content 0.50386
Mean single sequence MFE -31.56
Consensus MFE -20.51
Energy contribution -21.07
Covariance contribution 0.56
Combinations/Pair 1.26
Mean z-score -1.53
Structure conservation index 0.65
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.50
SVM RNA-class probability 0.718554
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 3441839 91 + 21146708
GUUGUGCCA-----UCUAUGGUGCAGGGUGGUUAAAUUCGCUUCGAAGCGGCUUUUGGUCACAUAUUAUAAGCAUGGUGGCAUAAGGGGAUGGGGA--------
.((((((((-----.(((((.(.....(((..((((.(((((....)))))..))))..)))........).)))))))))))))...........-------- ( -28.12, z-score =  -1.97, R)
>droSim1.chr2R 2167507 102 + 19596830
GUUGUGCCACCA--UCUAUGGUGCAGAGUGCUCAAAUUCGCUUCGAAGCGGCUUUUGGCCACAUAUUAUGAGCAUGGUGGGAUGAGUGGAUGGGCGGAUGGGGA
.(..(.((.(((--(((((..(.((..(((((((.....(((....)))(((.....)))........)))))))..)).)....))))))))..)))..)... ( -34.20, z-score =  -0.70, R)
>droSec1.super_1 1105667 102 + 14215200
GUUGUGCCACCA--UCUAUGGUGCAGAGUGCUCAAAUUCGCUUCGAAGCGGCUUUUGGCCACAUAUUAUGAGCAUGGUGGGAUGGGUGGACGGGGGGAUGGGGA
(((.(.((.(((--(((((..(((...(((((((.....(((....)))(((.....)))........))))))).)))..))))))))..)).).)))..... ( -34.10, z-score =  -0.70, R)
>droYak2.chr2L 16120098 86 + 22324452
AUUGUGCCUAUGUGUCUAUGGUGCAGUGUGGCUAAAAUCGGUUCGAAUCGGCUUUUGGCCACAUUUUAUAAGCAU--UGGGAUGGGGA----------------
.(..(.((...(((..(((((...((((((((((((((((((....))))).))))))))))))))))))..)))--.)).)..)...---------------- ( -29.80, z-score =  -2.75, R)
>consensus
GUUGUGCCACCA__UCUAUGGUGCAGAGUGCUCAAAUUCGCUUCGAAGCGGCUUUUGGCCACAUAUUAUAAGCAUGGUGGGAUGAGGGGAUGGGGG________
.((((.((((((....(((((((....(((((((((.(((((....)))))..))))))))).)))))))....)))))).))))................... (-20.51 = -21.07 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:50 2011