| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,283,189 – 2,283,286 |
| Length | 97 |
| Max. P | 0.735602 |
| Location | 2,283,189 – 2,283,286 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 81.63 |
| Shannon entropy | 0.31583 |
| G+C content | 0.56252 |
| Mean single sequence MFE | -42.80 |
| Consensus MFE | -30.18 |
| Energy contribution | -30.66 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.735602 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2283189 97 - 23011544 GGUGUAAACGAAAGUUGGGCGGAUGAG-----------GCA-----UUUGGGGGGUGU--GAGAAUCUUCCGAGGUCCGGA--CCCCGGCUUCAUUUGCCUGCCAAAACGGAUCUCU (((...(((....)))(((((((((((-----------((.-----...(((((((..--....))).((((.....))))--)))).))))))))))))))))............. ( -39.80, z-score = -2.07, R) >droYak2.chr2L 2264556 115 - 22324452 GGUGGAAACGAAAGUUGGGCGGAUGAGGCGUUUUUCCGGCGGGGGAUUCUGGGAGUAUGGGGGAAUCUUUCGAGGUCCGGA--CACCGGCUUCAUUUGCCUGCCAAAACGGAUCUUU (((...(((....)))(((((((((((((.....(((((((..(((((((...........)))))))..))....)))))--.....))))))))))))))))............. ( -45.80, z-score = -2.12, R) >droEre2.scaffold_4929 2320214 110 - 26641161 GGUGGUACCGUAAGUUGGGUGGAUGAGGAGUUUUUCCGACG-----ACUGGGAGGUGA--GGAAAUCUUUCGUAGUCCGAAGUCCCCGGCUUCAUUUGCCUGCCAAAACGGAUCUGU ...(((.((((..(..(((..(((((((.(..((((.(((.-----((.(..((((..--....))))..))).))).))))..)....)))))))..)))..)...)))))))... ( -36.40, z-score = -0.56, R) >droSec1.super_5 457910 108 - 5866729 GGUGGAGACGUAAGUUGGGCGGAUGAGGCGUUUUCCCGGCG-----UUUGGUGGGUGU--GGGAAUCUUCCGAGGUCCGGA--CCUCGGCUUCAUUUGCCUGCCAAAACGGAUCUCU ...(((..(((..((((((..((((...))))..)))))).-----(((((..((((.--..(((....(((((((....)--)))))).)))...))))..))))))))..))).. ( -44.40, z-score = -1.46, R) >droSim1.chr2L 2241808 107 - 22036055 GGUGGAGACGUAAGUUGGGCGGAUGAGGCGUUUUCCCGGCG-----UUUGGGGGGU-U--GGGAAUCUUCCGAGGUCCGGA--CCUCGGCUUCAUUUGCCUGCCAAAACGGAUCUCU ...(((..(((..(..(((((((((((((...((((((((.-----(.....).))-)--))))).....((((((....)--))))))))))))))))))..)...)))..))).. ( -47.60, z-score = -2.10, R) >consensus GGUGGAAACGUAAGUUGGGCGGAUGAGGCGUUUUCCCGGCG_____UUUGGGGGGUGU__GGGAAUCUUCCGAGGUCCGGA__CCCCGGCUUCAUUUGCCUGCCAAAACGGAUCUCU (((...(((....)))((((((((((((..................((((((((((........))))))))))..((((.....)))))))))))))))))))............. (-30.18 = -30.66 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:44 2011