| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,431,017 – 3,431,084 |
| Length | 67 |
| Max. P | 0.972328 |
| Location | 3,431,017 – 3,431,084 |
|---|---|
| Length | 67 |
| Sequences | 5 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 95.94 |
| Shannon entropy | 0.07019 |
| G+C content | 0.57935 |
| Mean single sequence MFE | -20.06 |
| Consensus MFE | -20.24 |
| Energy contribution | -20.24 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.63 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.526121 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3431017 67 + 21146708 GCAUGCAACAGGCUGUCUUGCCAACGGAGUUUUCCGAGCUCCGCU-----GACAGCGCGUCACUCAGUUUUC (.((((.....((((((..((....(((((((...))))))))).-----)))))))))))........... ( -19.30, z-score = -0.48, R) >droSim1.chr2R 2155561 67 + 19596830 GCAUGCAACAGGCUGUCCUGCCAACGGAGUUUUCCGAGCUCCGCU-----GACAGCGCGUCACUCAGUUUUC (.((((.....((((((..((....(((((((...))))))))).-----)))))))))))........... ( -19.20, z-score = -0.43, R) >droSec1.super_1 1093352 67 + 14215200 GCAUGCAACAGGCUGUCCUGCCAACGGAGUUUUCCGAGCUCCGCU-----GACAGCGCGUCACUCAGUUUUC (.((((.....((((((..((....(((((((...))))))))).-----)))))))))))........... ( -19.20, z-score = -0.43, R) >droYak2.chr2L 16107817 72 + 22324452 GCAUGCAACAGGCUGUCCUGCCAACGGAGUUUUCCGAGCUCCGCUUCGCUGACAGCGCGUCACACAGUUUUC (.((((.....((((((..((.((((((((((...)))))))).)).)).)))))))))))........... ( -23.40, z-score = -1.36, R) >droEre2.scaffold_4929 7473308 67 - 26641161 GCAUGCAACAGGCUGUCCUGCCAACGGAGUUUUCCGAGCUCCGCU-----GACAGCGCGUCACUCAGUUUUC (.((((.....((((((..((....(((((((...))))))))).-----)))))))))))........... ( -19.20, z-score = -0.43, R) >consensus GCAUGCAACAGGCUGUCCUGCCAACGGAGUUUUCCGAGCUCCGCU_____GACAGCGCGUCACUCAGUUUUC (.((((.....((((((.......((((((((...)))))))).......)))))))))))........... (-20.24 = -20.24 + 0.00)
| Location | 3,431,017 – 3,431,084 |
|---|---|
| Length | 67 |
| Sequences | 5 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 95.94 |
| Shannon entropy | 0.07019 |
| G+C content | 0.57935 |
| Mean single sequence MFE | -25.76 |
| Consensus MFE | -26.26 |
| Energy contribution | -26.26 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.73 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.87 |
| SVM RNA-class probability | 0.972328 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3431017 67 - 21146708 GAAAACUGAGUGACGCGCUGUC-----AGCGGAGCUCGGAAAACUCCGUUGGCAAGACAGCCUGUUGCAUGC .........(..(((.((((((-----(((((((.........))))))).....)))))).)))..).... ( -24.00, z-score = -1.55, R) >droSim1.chr2R 2155561 67 - 19596830 GAAAACUGAGUGACGCGCUGUC-----AGCGGAGCUCGGAAAACUCCGUUGGCAGGACAGCCUGUUGCAUGC .........(..((((.(((((-----(((((((.........))))))))))))....))..))..).... ( -24.70, z-score = -1.47, R) >droSec1.super_1 1093352 67 - 14215200 GAAAACUGAGUGACGCGCUGUC-----AGCGGAGCUCGGAAAACUCCGUUGGCAGGACAGCCUGUUGCAUGC .........(..((((.(((((-----(((((((.........))))))))))))....))..))..).... ( -24.70, z-score = -1.47, R) >droYak2.chr2L 16107817 72 - 22324452 GAAAACUGUGUGACGCGCUGUCAGCGAAGCGGAGCUCGGAAAACUCCGUUGGCAGGACAGCCUGUUGCAUGC .......(((..(((.((((((.((..(((((((.........))))))).))..)))))).)))..))).. ( -30.70, z-score = -2.68, R) >droEre2.scaffold_4929 7473308 67 + 26641161 GAAAACUGAGUGACGCGCUGUC-----AGCGGAGCUCGGAAAACUCCGUUGGCAGGACAGCCUGUUGCAUGC .........(..((((.(((((-----(((((((.........))))))))))))....))..))..).... ( -24.70, z-score = -1.47, R) >consensus GAAAACUGAGUGACGCGCUGUC_____AGCGGAGCUCGGAAAACUCCGUUGGCAGGACAGCCUGUUGCAUGC .........(..(((.((((((.....(((((((.........))))))).....)))))).)))..).... (-26.26 = -26.26 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:47 2011