| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,422,620 – 3,422,732 |
| Length | 112 |
| Max. P | 0.514900 |
| Location | 3,422,620 – 3,422,732 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 76.33 |
| Shannon entropy | 0.37409 |
| G+C content | 0.36517 |
| Mean single sequence MFE | -18.06 |
| Consensus MFE | -10.53 |
| Energy contribution | -10.97 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.514900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3422620 112 + 21146708 -------UAUUUUUACUUUCAACGCAACGGAAGUAUAAAAUAUUACCAUAAAGCUUCCGCAUAAACGAAUGUUUCGAAGCAUUCCCGACUUUAUACCUUGAUACCAUACCCUCUGCUGU -------................(((.(((((((..................))))))).......(((((((....))))))).............................)))... ( -16.07, z-score = -1.42, R) >droEre2.scaffold_4929 7465121 101 - 26641161 UCAAUAUUAUUUUCACUUUUAACGUAACGGAAGCUUAAAAUAUUACCAUAUGGCUUCCGCAUAAACGAA--------AGUAUUCCCGAAUUCAUACCUUGAAACUCUGU---------- ................((((((.(((.((((((((................)))))))).....((...--------.)).............))).))))))......---------- ( -17.09, z-score = -2.30, R) >droSec1.super_1 1079415 112 + 14215200 -------UAUUUUUCCUUUCAAUGCAACGGAAGUAUAUAAGAUUACCAUAUAGCUUCCGCAUGAACGGAUGUUGCGAAGCAUUCCCGACUUUAAACCUUGAUACCAUUACCUUCGCUGU -------......(((.((((.(((...((((((.((((.(.....).))))))))))))))))).)))....((((((...............................))))))... ( -21.78, z-score = -1.65, R) >droSim1.chr2R 2146731 112 + 19596830 -------UAUUUUUCCUUCCAAUCCAACGGAAGUAUAUAAGAUUACCAUAUAGCUUCCGCAUAAACGGAUGUUUCGAAGUAUUCCCGACUUUAAACCUUGAUACCAUUACCUUCGCUGU -------........(((((........)))))................(((((.((((......)))).((((.(((((.......)))))))))..................))))) ( -17.30, z-score = -1.03, R) >consensus _______UAUUUUUACUUUCAACGCAACGGAAGUAUAAAAGAUUACCAUAUAGCUUCCGCAUAAACGAAUGUUUCGAAGCAUUCCCGACUUUAAACCUUGAUACCAUUACCUUCGCUGU ...........................(((((((..................))))))).......(((((((....)))))))................................... (-10.53 = -10.97 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:42 2011