| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,401,615 – 3,401,708 |
| Length | 93 |
| Max. P | 0.933813 |
| Location | 3,401,615 – 3,401,708 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 78.63 |
| Shannon entropy | 0.27648 |
| G+C content | 0.28815 |
| Mean single sequence MFE | -13.33 |
| Consensus MFE | -10.43 |
| Energy contribution | -11.10 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.933813 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3401615 93 - 21146708 GUUAAGCACUUACGGCUUUUGUGUAUUUGAUAAGAACAUGUGUAUGAUAAUCAUAUGCACAAGCUUUUCCUUUUUCAUACUUUCCUUUUCAAA ...((((.......)))).((((.....((.(((....((((((((.....))))))))....))).))......)))).............. ( -12.70, z-score = -0.05, R) >droSec1.super_1 1058741 76 - 14215200 ----------------UUUUGUGUAUAUGAUUAUAACAUAUGUAUGAUAAUCAUAUGCAGACGCUUUUCCCUUUCCAUACUUUCCUUUUAAA- ----------------...(.(((((((((((((.((....))...))))))))))))).)...............................- ( -14.00, z-score = -3.58, R) >droSim1.chr2R 2123145 76 - 19596830 ----------------AAUUGUGUAUAUGAUUAGAACAUAUGUAUGAUAAUCAUAUGCAGACGCUUUUCCUUUUCCAUACUUUCCUUUUAAA- ----------------...(.((((((((((((...(((....))).)))))))))))).)...............................- ( -13.30, z-score = -2.51, R) >consensus ________________UUUUGUGUAUAUGAUUAGAACAUAUGUAUGAUAAUCAUAUGCAGACGCUUUUCCUUUUCCAUACUUUCCUUUUAAA_ .....................((((((((((((...(((....))).)))))))))))).................................. (-10.43 = -11.10 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:40 2011