| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,360,046 – 3,360,165 |
| Length | 119 |
| Max. P | 0.751081 |
| Location | 3,360,046 – 3,360,165 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 88.02 |
| Shannon entropy | 0.21079 |
| G+C content | 0.47189 |
| Mean single sequence MFE | -31.22 |
| Consensus MFE | -22.08 |
| Energy contribution | -22.60 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751081 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3360046 119 - 21146708 ACUAUGUACGUACAUACAUACGAUCUCGGCUCGGGGGGCAUAAUAACUUUUCAUGGCUAUUGUUGCAUUGGGGCCAACGAAAGGCGGAGAUCUCAAUCCGAUCCCACCGACUUUCACAC ..((((((......)))))).......(((((.((..((((((((.((......)).))))).))).)).)))))...(((((.(((.((((.......))))...))).))))).... ( -31.50, z-score = -1.24, R) >droSim1.chr2R 2081291 114 - 19596830 ----ACUACGUACAUACGUACGAUCUCGGCUC-GGGGGCAUAAUAACUUUUCAUGGCUAUUGUUGCAUUGGGGCCAACGAAAGGCGGAGAUCUCAAUCCGAUCCCACCGACUUUCACAC ----....(((((....))))).....(((((-.((.((((((((.((......)).))))).))).)).)))))...(((((.(((.((((.......))))...))).))))).... ( -34.40, z-score = -2.46, R) >droSec1.super_1 1017217 114 - 14215200 ----ACUAUGUACAUACAUACGAUCUCGGCUC-GGGGGCAUAAUAACUUUUCAUGGCUAUUGUUGCAUUGGGGCCAACGAAAGGCGGAGAUCUCAAUCCGAUCCCACCGACUUUCACAC ----..(((((....))))).......(((((-.((.((((((((.((......)).))))).))).)).)))))...(((((.(((.((((.......))))...))).))))).... ( -30.50, z-score = -1.59, R) >droYak2.chr2L 16038532 114 - 22324452 ----CAUCUGUACAUACAUACAAUCUCGGCUC-AGGGGCAUAAUCAUUUUUCAUGGUUAUUGUUCCAUUUGGGCCAACGAAAUGCGGAGAUCUUAAUCCGAUCCCACCGACUUUCACAC ----....((((......)))).....(((((-((((((((((((((.....))))))).))))))...))))))...((((..(((.((((.......))))...)))..)))).... ( -30.60, z-score = -2.74, R) >droEre2.scaffold_4929 7403205 102 + 26641161 ----------------CAUACAAUCUCGGCUC-AGGGGCAUAAUAAUUUUUCAUGGUUAUUGUUCCAUUUGGGCCAACGAAAUGCGGAGAUCUCAAUCCGAUCCCACCGACUUUCACAC ----------------...........(((((-(((((.(((((((((......))))))))).)).))))))))...((((..(((.((((.......))))...)))..)))).... ( -29.10, z-score = -2.73, R) >consensus ____ACUACGUACAUACAUACGAUCUCGGCUC_GGGGGCAUAAUAACUUUUCAUGGCUAUUGUUGCAUUGGGGCCAACGAAAGGCGGAGAUCUCAAUCCGAUCCCACCGACUUUCACAC ...........................(((((.((..((((((((.((......)).))))).))).)).)))))...(((((.(((.((((.......))))...))).))))).... (-22.08 = -22.60 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:35 2011