| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,278,942 – 2,279,038 |
| Length | 96 |
| Max. P | 0.519106 |
| Location | 2,278,942 – 2,279,038 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 77.22 |
| Shannon entropy | 0.43160 |
| G+C content | 0.44260 |
| Mean single sequence MFE | -19.56 |
| Consensus MFE | -11.36 |
| Energy contribution | -12.20 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519106 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2278942 96 - 23011544 -------CAUUCGGUGAGCCAUAAUUCAAUUUAUGGCCC-AUGGCAACCUCAAAACCCACUUUAGAGCCGUACCGAGAUACACUUGGCAAAUAUAAGCAAAUAU -------..(((((((.(((((((......))))))).)-(((((.....................))))))))))).........((........))...... ( -21.70, z-score = -2.07, R) >droSim1.chr2L 2237584 90 - 22036055 -------CAUUCGGUAAGCCAUAAUUAAAUUGAUGGCCC-CUGGCAACCUCAUAACCCACUUUAGAGCCUCACCGAGAUACACUUGG------ACAGCAAAUAG -------....(((...(((((..........)))))..-)))((...(((.(((......)))))).....(((((.....)))))------...))...... ( -14.70, z-score = -0.02, R) >droSec1.super_5 453810 90 - 5866729 -------CAUUCGGUAAGCCAUAAUUAAAUUUAUGGCCC-CUGGCAACCUCAUAACCCACUUUAGAGCCGCGCCGAGAUACACUUGG------ACAGCAAAUAG -------.....(((..(((((((......)))))))..-..(....)..................)))((.(((((.....)))))------...))...... ( -21.10, z-score = -1.98, R) >droEre2.scaffold_4929 2316033 89 - 26641161 -------CAUUCGGUGAGCCAUAAUUCAAUUUAUGGCC--AUGGCAACCUCAUAACCCACUUUAGAGCCGGACCGAGAUACACUUAG------ACAGCAAAUAU -------..(((((((.(((((((......))))))))--.((((.....................)))).))))))..........------........... ( -19.40, z-score = -2.07, R) >droYak2.chr2L 2260380 90 - 22324452 -------CAUUCGGUGAGCCAUAAUUCAAUUUAUGGCCC-CUGGCAACCCCAUAACCCACUUUAGAGCCAGGCCGAGAUACACUUGG------ACAGCAAAUAU -------.....(.((.(((((((......))))))).(-(((((.....................))))))(((((.....)))))------.)).)...... ( -24.50, z-score = -2.55, R) >droAna3.scaffold_12916 9993839 91 + 16180835 -------CAUUUGUUGGGCCAUAAUUCAAUUUAUGCCCCGUCGGCAACCUCAUAACCCAGUUUAGAGCCCGGCUGAGAUACACUUGG------ACGGCAAAUAU -------.((((((.((((.((((......))))))))(((((....)((((...((..((.....))..)).)))).........)------))))))))).. ( -21.60, z-score = -0.35, R) >droWil1.scaffold_180708 2242280 89 - 12563649 UUUUUAAUAUCCAAUGAGCCAUAAUUCAAUUUGGGUGCCUCUGGCAACCUAAUAACCCAGUGAAGAACCAAACAGAGAGAUAGUACAUA--------------- .......(((((..((........((((...(((((......(....)......))))).))))........))..).)))).......--------------- ( -13.89, z-score = -0.13, R) >consensus _______CAUUCGGUGAGCCAUAAUUCAAUUUAUGGCCC_CUGGCAACCUCAUAACCCACUUUAGAGCCGGACCGAGAUACACUUGG______ACAGCAAAUAU .........((((((..(((((((......))))))).....(((.....................)))..))))))........................... (-11.36 = -12.20 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:43 2011