| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,358,674 – 3,358,767 |
| Length | 93 |
| Max. P | 0.959805 |
| Location | 3,358,674 – 3,358,767 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 64.40 |
| Shannon entropy | 0.67117 |
| G+C content | 0.50885 |
| Mean single sequence MFE | -32.92 |
| Consensus MFE | -10.13 |
| Energy contribution | -10.90 |
| Covariance contribution | 0.77 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959805 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3358674 93 - 21146708 -CCCACUGCUCCUCCUCCAGUGA---GGCAUA--AUCAUUGGAUUGGGUCAAAUUGGAGCAUCGCAGCGGGCUGUCAAGCCGGUUUGCAUGGUUCUAAU -.(((.(((((((((((((((((---......--.))))))))..))).......))))))..(((((.((((....)))).).)))).)))....... ( -34.21, z-score = -1.80, R) >droPer1.super_44 47273 89 + 614636 CAGAGCUGUUUGACACGAUCUUUGUUUAGGUA--CCUGUUCAAUUGGAUCGGGUUUGAGU-------CUGGUUCUCAAGCCGGUUU-UACAGUUCUAAU .((((((((..(((.(((((((((..(((...--.)))..)))..))))))((((((((.-------......)))))))).))).-.))))))))... ( -37.00, z-score = -5.86, R) >dp4.chr3 7394218 89 + 19779522 CAGAGCUGUUUGACACGGUCUUUGUUUAGGUA--CCUGUUCAAUUGGAUCGGGUUUGAGU-------CUGGUUCUCAAGCCGGUUU-UACAGUUCUAAU .((((((((..(((.(((((((((..(((...--.)))..)))..))))))((((((((.-------......)))))))).))).-.))))))))... ( -36.40, z-score = -5.60, R) >droEre2.scaffold_4929 7401836 87 + 26641161 ------UCCUUCUCCUCCAGC----UGGCAUA--GUCAGUGGUUCAGGUUCAAGUAGAGCACCGUAGCGGGUAGGCAAGCCGGUUUGCACGGUUCUAAU ------..(((..((((((.(----((((...--))))))))...)))...)))((((..(((((.(((((..((....))..)))))))))))))).. ( -26.00, z-score = -0.95, R) >droYak2.chr2L 16037247 99 - 22324452 UCCUCCUCCUCCAGCUGGCAUGGCAUAGCAUAGGAUCAGUGGUUGAGGUUAAAGUAGAGCACCGCAGCGGGCAGUCAAGCCGGUUUGCACGGUUCUAAU ....((((..(((.(((((...((...))....).)))))))..))))......((((((...(((((.(((......))).).))))...)))))).. ( -31.20, z-score = -0.25, R) >droSec1.super_1 1015872 95 - 14215200 -CCCACUGCUCCUCCUCCAGUGGC-UUGGUUA--AUCAUUGGUUUGGGUCAAAGUGGAGCACCGCAGCGGGCUGUCAAGCCGGUUUGUAUGGUUCUAAU -.(((((...(((...((((((..-(.....)--..))))))...)))....)))))((.((((((((.((((....)))).).))))..))).))... ( -32.10, z-score = -0.93, R) >droSim1.chr2R 2079934 95 - 19596830 -CCCACUGCUCCUCCUCCAGUGGC-UUGGUUA--AUCAUUGGUUUGGGUCAAAGUGGAGCACCGCAGCGGGCUGUCAAGCCGGUUUGCAUGGUUCUAAU -.(((((...(((...((((((..-(.....)--..))))))...)))....)))))((.((((((((.((((....)))).).))))..))).))... ( -33.50, z-score = -0.99, R) >consensus _CCCACUGCUCCUCCUCCAGUGGC_UUGGAUA__AUCAUUGGUUUGGGUCAAAGUGGAGCACCGCAGCGGGCUGUCAAGCCGGUUUGCACGGUUCUAAU ......................................................((((((...(((((.((((....)))).).))))...)))))).. (-10.13 = -10.90 + 0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:35 2011