| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,348,162 – 3,348,253 |
| Length | 91 |
| Max. P | 0.837141 |
| Location | 3,348,162 – 3,348,253 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 67.97 |
| Shannon entropy | 0.62441 |
| G+C content | 0.52224 |
| Mean single sequence MFE | -29.49 |
| Consensus MFE | -12.90 |
| Energy contribution | -12.42 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.837141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3348162 91 + 21146708 -----------------AACUAGUUGUCCAAAAACUCCCACUCGCUGGAGGUGUUUGAGUCACUGGUGGCUGGCGUUUCCU-UGUGG--AUCGCCAGUGGAUCGCCAGCCC -----------------.((((((.(..((((..((((........))))...))))..).))))))((((((((..(((.-..(((--....)))..))).)))))))). ( -38.40, z-score = -3.33, R) >droGri2.scaffold_15245 3977093 103 + 18325388 GGCUACAGAUA-----ACAUUAGUUAUCUAAAAACUCCCAUUCACUGGAUGUGUUGGAAUCGCCAGAUGCGGGUGGUGUCC---GCUGCUUCUUGAGUGGAUCAGCAGCGC .(((.((((((-----((....)))))))........(((((((..(((.((..((((((((((.......)))))).)))---)..)).))))))))))....).))).. ( -33.10, z-score = -1.37, R) >droMoj3.scaffold_6496 10803378 105 - 26866924 GGCUGCAAAAAUACACAUUUUAGUUAUCUAGAAACUCCCAUUCGCUGGAUGUGUUUGAGCCACCUGAGGCGGGCG---UCU---CCUUCUUUAUGAAUGGAUCAGCUGCGC ((((.(((....(((((((((((....))))))....(((.....))).)))))))))))).......((((((.---..(---(((((.....))).)))...))).))) ( -27.20, z-score = -0.20, R) >droVir3.scaffold_12875 10874000 99 + 20611582 GGCUACA-AUC-----AUUUUAGUUAUCCAAAAACUCCCAUUCGCUGGAUGUGUUCGAAUCACCUGAUGCAGGCG---UUU---CCUGCUUUCGAAGCGGAUCGCCUGCGC .((....-(((-----(........(((((...............)))))(((.......))).))))(((((((---..(---((.(((.....)))))).))))))))) ( -26.46, z-score = -0.96, R) >droWil1.scaffold_180700 481781 94 - 6630534 -----------------AAUUAAUUAUCAAGAAAUUCCCAUUCACUGGACGUAUUAGAAUCACUUGUGGCUGGUGGUGUUGGUGUAGCCUUUUUCAAAGGAUCACCCGCUC -----------------................((..(((..(((.((..............)).)))..)))..))((.((((...((((.....))))..)))).)).. ( -18.34, z-score = 0.62, R) >droPer1.super_2 2125738 85 - 9036312 -----------------AACUAAUUGUCCAGAAACUCCCAUUCACUGGACGUGUUGGAAUCGCUUGUGGCUGG-GGUUUCA--------UUUCUCAAGGGGUCUCCAGCCC -----------------..((((((((((((.............))))))).)))))..........((((((-(((..(.--------........)..).)))))))). ( -27.42, z-score = -1.38, R) >dp4.chr3 13091017 85 - 19779522 -----------------AACUAAUUGUCCAGAAACUCCCAUUCACUGGACGUGUUGGAAUCGCUUGUGGCUGG-GGUUUCA--------UUUCUCAAGGGGUCUCCAGCCC -----------------..((((((((((((.............))))))).)))))..........((((((-(((..(.--------........)..).)))))))). ( -27.42, z-score = -1.38, R) >droAna3.scaffold_13266 6815043 85 + 19884421 -----------------AACUAGUUGUCCAGAAACUCCCACUCGCUGGAUGUGUUGGAGUCGCUUGUGGCUGGUGCUUCUU-UACG--------CAGCGGAUCCCCGGCCC -----------------.((((((..(..((..((((((((((....)).)))..)))))..)).)..))))))((.....-...)--------)..(((....))).... ( -23.20, z-score = 0.71, R) >droEre2.scaffold_4929 7391432 85 - 26641161 -----------------AACUAGUUGUCCAAAAACUCCCACUCGCUGGAGGUGUUUGAAUCACUGGUGGCUGGUGUUUCCU-UGCA--------CAGCGGAUCGCCAGCUC -----------------.((((((.((.((((..((((........))))...)))).)).))))))((((((((..(((.-....--------....))).)))))))). ( -30.20, z-score = -2.16, R) >droYak2.chr2L 16026847 85 + 22324452 -----------------AACUAGUUGUCCAAAAACUCCCACUCGCUGGAGGUGUUUGAGUCCCUGGUGGCCGGCGUUUCCU-UGCA--------CAGUGGAUCGCCAGCUC -----------------.(((((..(..((((..((((........))))...))))..)..)))))(((.((((..(((.-....--------....))).)))).))). ( -27.30, z-score = -0.83, R) >droSec1.super_1 1005386 91 + 14215200 -----------------AACUAGUUGUCCAAAAACUCCCACUCGCUGGAGGUGUUUGAGUCACUCGUGGCUGGCGUUUCCU-UGUGG--CUCGCCAGUGGAUCGCCAGCCC -----------------.((.(((.(..((((..((((........))))...))))..).))).))((((((((..(((.-..(((--....)))..))).)))))))). ( -35.30, z-score = -2.63, R) >droSim1.chr2R 2069472 91 + 19596830 -----------------AACUAGUUGUCCAAAAACUCCCACUCGCUGGAGGUGUUUGAGUCACUGGUGGCUGGCGUUUCCU-UGUGG--CUCGCCAGUGGAUCGCCAGCCC -----------------.((((((.(..((((..((((........))))...))))..).))))))((((((((..(((.-..(((--....)))..))).)))))))). ( -39.50, z-score = -3.48, R) >consensus _________________AACUAGUUGUCCAAAAACUCCCACUCGCUGGAGGUGUUUGAAUCACUUGUGGCUGGCGUUUCCU_UGCG___UUU_UCAGUGGAUCGCCAGCCC .................................((..(((.....)))..))...............((((((((...((..................))..)))))))). (-12.90 = -12.42 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:34 2011