| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,340,165 – 3,340,272 |
| Length | 107 |
| Max. P | 0.734158 |
| Location | 3,340,165 – 3,340,272 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 90.54 |
| Shannon entropy | 0.12873 |
| G+C content | 0.37991 |
| Mean single sequence MFE | -28.74 |
| Consensus MFE | -20.24 |
| Energy contribution | -20.47 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734158 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3340165 107 + 21146708 UGAUAGUGUGGUUGGUAAUGCUUAAUCGUCUUUUUGUAGUGAAGUCGAUUGAGUGAGCAAAAGUGAAGCCUAACUAACAGGUUUCGAUAAGCCACAAUAGCUCGGUU ......(((((((.((...(((((((((.((((.......)))).)))))))))..)).....((((((((.......))))))))...)))))))........... ( -31.40, z-score = -2.78, R) >droSec1.super_1 984568 103 + 14215200 UGAUAGU----GUGGUUAUGCUCAAUCGUCUUUUUGUAGUGAAGUCAAUUGAGUGAGCAACAGUGAAGCCUAACUAACAGGUUUAGAUAAGCCACAAUACAUCAGUU ((((..(----((((((.((((((.(((.((((.......)))).....))).))))))......((((((.......)))))).....)))))))....))))... ( -26.40, z-score = -1.69, R) >droSim1.chr2R 2049445 103 + 19596830 UGAUAGU----UUUGUAAUACUCAAUCGUCUUUUUGUAGUGAAGUCGAUUGAGUGAGCAACAGUGAAGCCUAACUAACAGGUUUAGAUAAGCCACAAUACAUCAGUU ((((.((----.((((..((((((((((.((((.......)))).)))))))))).((.......((((((.......))))))......)).)))).))))))... ( -28.42, z-score = -3.09, R) >consensus UGAUAGU____UUGGUAAUGCUCAAUCGUCUUUUUGUAGUGAAGUCGAUUGAGUGAGCAACAGUGAAGCCUAACUAACAGGUUUAGAUAAGCCACAAUACAUCAGUU ((.((((......(((..((((((((((.((((.......)))).)))))))))).((....))...)))..)))).))(((((....))))).............. (-20.24 = -20.47 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:32 2011