| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,339,565 – 3,339,675 |
| Length | 110 |
| Max. P | 0.576573 |
| Location | 3,339,565 – 3,339,675 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 92.26 |
| Shannon entropy | 0.10659 |
| G+C content | 0.41023 |
| Mean single sequence MFE | -26.37 |
| Consensus MFE | -22.94 |
| Energy contribution | -22.83 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.576573 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3339565 110 - 21146708 --UAGCAGUAGAAAAUUAUUUCUUGACAUGAGGGCAAUGAUACCAUACAUCAGGACUGAUUCGAGAGUCAAGUGCCCAAUAGGAGUACAUACUCAUGCGAAGAAGUACCUCC --..............((((((((..((((((.....((((.......)))).((((........))))..((((((....)).))))...))))))..))))))))..... ( -25.60, z-score = -1.35, R) >droSec1.super_1 983813 112 - 14215200 CUUAGCAACAGAAUAUUAUUUAUUGACAUGAGGGCAAUGGUACUAAACAUCAGUACUGAUUCGAGAGUCAAGUACCCAAUAGGAGUACCUACUCAUGCGAAGAAGUACCUCC ................(((((.(((.((((((......((((((........(((((((((....)))).)))))((....))))))))..)))))))))..)))))..... ( -25.70, z-score = -1.48, R) >droSim1.chr2R 2048734 112 - 19596830 CUUAGCAACAGAAUAUUAUUUAUUGACAUGAGGGCAAUGGUACUGAACAUCAGUACUGAUUCGAGAGUCAAGUACCCAAUAGGAGUACCUACUCAUGCGAAGAAGUACCUCC .............................((((((...(((((((.....)))))))..((((.((((...((((((....)).))))..))))...))))...)).)))). ( -27.80, z-score = -1.83, R) >consensus CUUAGCAACAGAAUAUUAUUUAUUGACAUGAGGGCAAUGGUACUAAACAUCAGUACUGAUUCGAGAGUCAAGUACCCAAUAGGAGUACCUACUCAUGCGAAGAAGUACCUCC .............................((((....((((.......)))).((((..((((.((((...((((((....)).))))..))))...))))..)))))))). (-22.94 = -22.83 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:31 2011