| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,338,063 – 3,338,181 |
| Length | 118 |
| Max. P | 0.848148 |
| Location | 3,338,063 – 3,338,181 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.33 |
| Shannon entropy | 0.39595 |
| G+C content | 0.37712 |
| Mean single sequence MFE | -23.87 |
| Consensus MFE | -12.70 |
| Energy contribution | -13.27 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.848148 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3338063 118 - 21146708 AAAUGCCUCCAGUGCA--UUUCCAACAUUGCUCUGUAGGUUGCAAUUACGACCUGCAAUUGAUUCGCCCUAAUCGCUGUAAUUACAUCUAUUACCGAAUCAAUUAAACAAAUGUUCUGCA (((((((....).)))--)))..((((((.....((((((((......))))))))((((((((((...((((.(.(((....))).).)))).)))))))))).....))))))..... ( -29.40, z-score = -4.01, R) >droSim1.chr2R 2047219 118 - 19596830 AAAUGCCUCCAGUGCA--UUUCCAACAUUGCUCUGCAGGCUGCAAUUACGACCUGCAAUUGAUUCGCCCUAAUCGCUGUAAUUACAUCUAUUACCGAAUCAAUUAAACAAAUGUUCUGCA ....((((.(((.(((--..........))).))).)))).(((...(((......((((((((((...((((.(.(((....))).).)))).)))))))))).......)))..))). ( -27.72, z-score = -3.07, R) >droSec1.super_1 982392 111 - 14215200 -------UCCAGUGCA--UUUCCAACAUUGCUCUGCAGGCUGCAAUUACAACCUGCAAAUGAUUCGCCCUAAUCGCUGUAAUUACAUCUAUUACCGAAUCAAUUAAACAAAUGUUCUGCA -------..(((.(((--(((............((((((.((......)).))))))..(((((((...((((.(.(((....))).).)))).))))))).......)))))).))).. ( -25.50, z-score = -3.30, R) >droYak2.chr2L 16016656 118 - 22324452 AAAUGCCUUCAGUGCA--UUUCCAACAUUUUUCUACAGGCUGCAAUUACGACCUGCAAUUGAUUUGCCCUAAUCGCUGUAAUUACAUCUAUUACCGAACCAAUUAAACAAAUGAUCUACA (((((((....).)))--)))....(((((.....((((.((......)).)))).(((((.((((...((((.(.(((....))).).)))).)))).)))))....)))))....... ( -14.80, z-score = -0.25, R) >droEre2.scaffold_4929 7379660 118 + 26641161 AAAUGCCUCCAGUGCA--UUUCCAACAUUGCUCUGCAGGCAGCAAUUACGACCUGCAAUUGAUUUGGCCUAAUCGCUGUAAUUACAUCUAUUACCGAAUCAAUUAAACAAAUGUUCUGCU ...(((((.(((.(((--..........))).))).)))))(((...(((......(((((((((((..((((.(.(((....))).).))))))))))))))).......)))..))). ( -30.22, z-score = -3.20, R) >droAna3.scaffold_13266 6803557 114 - 19884421 AUGAGCAUUCUGUUCGAUUUCUUUGCAUUUUUCUAUGUAUAGCAAUUAUAGUUUCAGAGCGAUGUGACCUAAACGGUGCAAUUAUAUUGAUUAUCCUAACAAUUAAA-GAAUACA----- ..((((.....))))((((.((.(((((......))))).)).))))...(((...((.((((((((((.....))).....)))))))....))..))).......-.......----- ( -15.60, z-score = 1.20, R) >consensus AAAUGCCUCCAGUGCA__UUUCCAACAUUGCUCUGCAGGCUGCAAUUACGACCUGCAAUUGAUUCGCCCUAAUCGCUGUAAUUACAUCUAUUACCGAAUCAAUUAAACAAAUGUUCUGCA .......................((((((.....(((((.((......)).)))))((((((((((...((((.(.(((....))).).)))).)))))))))).....))))))..... (-12.70 = -13.27 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:30 2011