| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,305,797 – 3,305,896 |
| Length | 99 |
| Max. P | 0.574162 |
| Location | 3,305,797 – 3,305,896 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 81.31 |
| Shannon entropy | 0.29227 |
| G+C content | 0.37880 |
| Mean single sequence MFE | -18.98 |
| Consensus MFE | -12.36 |
| Energy contribution | -12.18 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.574162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3305797 99 - 21146708 AUAAUUGCAAUUACUGGCCUUUUCUC-------AUAUU-CAUUCACUCCAC---UUUUUUGGUUUAACUCAACCUUGUGGUCCUUCCACAUUAGUGCGGUUUGCAUUGUA (((((.((((..((((..........-------.....-............---......((((......)))).(((((.....)))))......))))))))))))). ( -16.30, z-score = -1.06, R) >droEre2.scaffold_4929 7352157 109 + 26641161 AUAAUUGCAAUUACUGGCCCUUUCUCUUCGAGAAUUUCGCAGAAAUUCCUCAUGCCUUUAGGUUUAACUCAGCCUAUUGGUAUUUCCGAAUUAUUGCAG-UUGUGUUGUA (((((((((((..(((.....(((((...))))).....))).(((((...(((((..((((((......))))))..)))))....))))))))))))-))))...... ( -30.40, z-score = -3.97, R) >droSec1.super_1 955223 98 - 14215200 AUAAUUGCAAUUACUGGCCUUUUCUC-------AUCUU-UAUUCACUCCAC----CUUUUGGUUUAACUCAGCCUAGUGGUCCUUCCACAUUAUUGCAGUUUGCAUUGUA (((((.((((..((((..........-------.....-............----.....((((......))))..((((.....)))).......))))))))))))). ( -16.50, z-score = -1.40, R) >droSim1.chr2R 2055699 98 - 19596830 AUAAUUGCAAUUACUGGCCUUUUCUC-------AUCUU-CAUUCACUCCAC----CUUUUGGUUUAACUCCUCCUAAUGGUCCUUCCGCAUUAUUGCAGUUUGCAUUGUA ..(((((((((.....((........-------.....-..........((----(....)))...............((.....))))...)))))))))......... ( -12.70, z-score = -0.79, R) >consensus AUAAUUGCAAUUACUGGCCUUUUCUC_______AUCUU_CAUUCACUCCAC____CUUUUGGUUUAACUCAGCCUAGUGGUCCUUCCACAUUAUUGCAGUUUGCAUUGUA (((((.((((..((((............................................((((......))))..((((.....)))).......))))))))))))). (-12.36 = -12.18 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:29 2011