| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,298,695 – 3,298,787 |
| Length | 92 |
| Max. P | 0.740431 |
| Location | 3,298,695 – 3,298,787 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 75.12 |
| Shannon entropy | 0.36565 |
| G+C content | 0.49130 |
| Mean single sequence MFE | -28.68 |
| Consensus MFE | -18.54 |
| Energy contribution | -18.48 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3298695 92 - 21146708 UUUGUUCGGGUGAGGGAG--GGCGGCGGAGAGUGAGUGGGAGGGCUGACUAUAUAUUAUAUAUAUGCGGCCAUAACUCACGAUCGCUAAUUAAA------------------- ...((((..........)--)))(((((...((((((.....(((((..((((((...))))))..)))))...))))))..))))).......------------------- ( -27.80, z-score = -2.40, R) >droSim1.chr2R 2016110 94 - 19596830 UUUGUUCGGGUGAGAGGGUGGGCGGGGGAGGGAGAGUGGGAGGGCUGACUAUAUAUUAUAUAUAUGCGGCCAUAACUCACGAUCGCUAAUUAAA------------------- ((((((((..(....)..))))))))..((.((..(((((..(((((..((((((...))))))..)))))....)))))..)).)).......------------------- ( -26.60, z-score = -2.31, R) >droSec1.super_1 948125 94 - 14215200 UUUGUUCGGGUGAGAGGGUGGGCGGGGGAGGUAGAGUGGGAGGGCUGACUAUAUAUUAUAUAUAUGCGGCCAUAACUCACGAUCGCUAAUUAAA------------------- ((((((((..(....)..))))))))((.(((...(((((..(((((..((((((...))))))..)))))....))))).))).)).......------------------- ( -24.10, z-score = -1.18, R) >droEre2.scaffold_4929 7345240 106 + 26641161 UUUG-UGGGGCGAGGGG------GGCAGUUGGAGGGCACCGGGGCUGACUAUAUAUUAUAUAUAUGCGGCCAUAACUCACGAUCGCCUUUGCGCCCAGUUGCUGCUAAUUAAA ....-..(((((..(((------(((.((((((((....)..(((((..((((((...))))))..)))))....))).)))).)))))).)))))(((....)))....... ( -36.20, z-score = -0.68, R) >consensus UUUGUUCGGGUGAGAGGG__GGCGGCGGAGGGAGAGUGGGAGGGCUGACUAUAUAUUAUAUAUAUGCGGCCAUAACUCACGAUCGCUAAUUAAA___________________ ........(((((..(......(......)...((((.....(((((..((((((...))))))..)))))...)))).)..))))).......................... (-18.54 = -18.48 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:28 2011