| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,276,073 – 3,276,163 |
| Length | 90 |
| Max. P | 0.697293 |
| Location | 3,276,073 – 3,276,163 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 73.04 |
| Shannon entropy | 0.38455 |
| G+C content | 0.33090 |
| Mean single sequence MFE | -23.60 |
| Consensus MFE | -11.04 |
| Energy contribution | -11.38 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.697293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3276073 90 + 21146708 --------------AAUGCUU--CGUAUUUGCUUUAAUGGUAUUGUAAUCAUUCAAGUGUUUACGACUUUUGAAUAUGAUCCUAUUCAAUGCCGGAAA-AGACGCAU --------------.((((.(--((((..(((((.((((((......)))))).)))))..)))))...(((((((......))))))).........-....)))) ( -20.70, z-score = -2.14, R) >droSim1.chr2R 1992179 107 + 19596830 AUCUUGAUAGUGUGUGCAAUUAUCAUAUUUGCUUCGAUGGGAUUGUAAUCAUUCAAGUGUUUACGACAUUUGAAUAUGAUCCUAUUCAAUGCCAGAAAUACCUGCAU ....(((((((.......)))))))..........((((((((..((....((((((((((...))))))))))))..))))))))..((((.((......)))))) ( -26.70, z-score = -1.84, R) >droSec1.super_1 927154 96 + 14215200 GUUUCAAUAAUAUUUAUGCUU--CGUAUUUGCUUCGAUGGGAUUGUAAUCAUUCAAGUGUUU---------GAAUAUGAUCCUAUUCAAUGCCAGAAAUACCUGCAU ...............((((..--.((((((((((.((((((((..((.(((..(....)..)---------)).))..)))))))).)).))...))))))..)))) ( -23.40, z-score = -2.58, R) >consensus _U_U__AUA_U_U_UAUGCUU__CGUAUUUGCUUCGAUGGGAUUGUAAUCAUUCAAGUGUUUACGAC_UUUGAAUAUGAUCCUAUUCAAUGCCAGAAAUACCUGCAU ...................................((((((((..((.(((...................))).))..))))))))..((((.((......)))))) (-11.04 = -11.38 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:27 2011