| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,207,380 – 3,207,472 |
| Length | 92 |
| Max. P | 0.999864 |
| Location | 3,207,380 – 3,207,472 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 60.65 |
| Shannon entropy | 0.68213 |
| G+C content | 0.36016 |
| Mean single sequence MFE | -21.64 |
| Consensus MFE | -12.52 |
| Energy contribution | -13.16 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.53 |
| Mean z-score | -2.86 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 4.62 |
| SVM RNA-class probability | 0.999864 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3207380 92 - 21146708 GAUGAUUGUUAAUUUACAGAGCUUUGUGAGUGAGUACUUACGAUUGUGCUCAUUACUCGCUUUGUUCUUUAUUUACAGACAAGUGAUUGUCC ......(((.(((..(((((((...((((.(((((((........)))))))))))..))))))).....))).)))(((((....))))). ( -27.50, z-score = -3.65, R) >droSim1.chr2R_random 702730 75 - 2996586 GAUGAUUGUUAAUUUACAGAGCCGUGUGAGUGGGUACUUACAAUUGUGCCCAACACUCGCUCAGUUCUUUAUUUA----------------- .................(((((.(.((((((((((((........))))))...)))))).).))))).......----------------- ( -23.00, z-score = -3.30, R) >droSec1.super_1 850944 75 - 14215200 GAUGAUUGUUAAUUUACAGAGCCGUGUGAGUGGGUACCUACAAUUGUGCCCAACACUCGCUCAGUUCUUUAUUUA----------------- .................(((((.(.((((((((((((........))))))...)))))).).))))).......----------------- ( -21.80, z-score = -2.82, R) >droEre2.scaffold_4929 7255095 86 + 26641161 GAUGAUUGUUUAUUUUUAGAGCUUUGUGAGUCGGUA------AUUGUAUUCCGUGCUCGCUUUGUUCUUAAUUUACAGACAAGUGAUUGUCC ......(((..(((...(((((...(((((((((..------........))).))))))...))))).)))..)))(((((....))))). ( -24.90, z-score = -4.14, R) >droVir3.scaffold_12875 10714056 82 - 20611582 ---GAUCA-UAAUUUUUAGCAGUGUAUGAGUCAAUAUUU-UAUUGGUACUCGAUUUGAUAACUAUUUUUUAUCUCACAUACGUUAAG----- ---.....-......(((((.((((.((((..((.((.(-(((..(........)..))))..))...))..)))).))))))))).----- ( -11.00, z-score = -0.40, R) >consensus GAUGAUUGUUAAUUUACAGAGCUGUGUGAGUGGGUACUUACAAUUGUGCUCAAUACUCGCUCUGUUCUUUAUUUA________U_A______ .................(((((...((((((((((((........))))))...))))))...)))))........................ (-12.52 = -13.16 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:23 2011