| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,190,949 – 3,191,007 |
| Length | 58 |
| Max. P | 0.993046 |
| Location | 3,190,949 – 3,191,007 |
|---|---|
| Length | 58 |
| Sequences | 4 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 91.60 |
| Shannon entropy | 0.13300 |
| G+C content | 0.49406 |
| Mean single sequence MFE | -19.00 |
| Consensus MFE | -16.83 |
| Energy contribution | -16.45 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.00 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.58 |
| SVM RNA-class probability | 0.993046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3190949 58 - 21146708 UAAAAGGCAUGCGACACAAAAA-GUGGGCGUGGCAAAUCGGGGAAUA--CUGCCUUGGUUG .....(.(((((..(((.....-))).))))).).((((((((....--...)))))))). ( -18.70, z-score = -2.82, R) >droSim1.chr2R_random 670225 58 - 2996586 UAAAAGGCAUGCGACACAAAAA-GUGGGCGUGGCAAAUCGGGGAAUA--CUGCCUUGGUUG .....(.(((((..(((.....-))).))))).).((((((((....--...)))))))). ( -18.70, z-score = -2.82, R) >droSec1.super_1 834886 58 - 14215200 UAAAAGGCAUGCGACACAAAAA-GUGGGCGUGGCAAAUCGGGGCAUA--CUGCCUUGGUUG .....(.(((((..(((.....-))).))))).).(((((((((...--..))))))))). ( -22.90, z-score = -3.99, R) >droYak2.chr2L 15875460 61 - 22324452 UAAAAGGCAUGUGACACAAAAAGGUGGGCGUGUCAAAUCGGGGAUUGGUUUGCUUUGGUUG .....(((((((..(((......))).))))))).((((((((.........)))))))). ( -15.70, z-score = -2.37, R) >consensus UAAAAGGCAUGCGACACAAAAA_GUGGGCGUGGCAAAUCGGGGAAUA__CUGCCUUGGUUG .....(.(((((..(((......))).))))).).((((((((.........)))))))). (-16.83 = -16.45 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:21 2011