| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,190,521 – 3,190,641 |
| Length | 120 |
| Max. P | 0.517535 |
| Location | 3,190,521 – 3,190,641 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.86 |
| Shannon entropy | 0.25031 |
| G+C content | 0.47627 |
| Mean single sequence MFE | -37.50 |
| Consensus MFE | -25.66 |
| Energy contribution | -25.60 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517535 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3190521 120 + 21146708 CCAGCGAAGGUGUCAAUUCGAAAGAUACUAUAUCAUCGAAGAGGAUUUCGGCACUUGUGAUGUUCUGAUGCGGACUAACACCUCUGCAAUAUGAAUAUGCAUGGGGCAAUCCGCAUAUUG ...((((.(((((....((....))....))))).)).....(((((...((.((..((((((((((.((((((........)))))).)).)))))).))..)))))))))))...... ( -34.80, z-score = -1.69, R) >droSim1.chr2R_random 669782 120 + 2996586 CCAGCGGAGGUGUCAAUUCGAAAGAUACCAUAGCUACGAGGAGGAUUGCGGCACUUGUGAAGUUCUGAUGCGGGCUAACACCUCUGCAGUAUGAAUAUUCAUGGGGUAAUCCGCAUUUUG ...(((((((((((.........))))))...((..(((......)))..)).((..((((((((...((((((........))))))....)))).))))..))....)))))...... ( -38.40, z-score = -1.76, R) >droSec1.super_1 834519 119 + 14215200 CCAGCGGAGGUGUCAAUUCGAAAGAUACUAAAGCUACGAGGAGGAUUGCGGCACUUGUGAUGUUCUGAUGCGGGCUAACACCUCUGCAAUAUGAAUAUU-AUGGGGUAAUCCACAUUUUG ...((((((((((....((....))......((((.((.((((.((..((.....))..)).))))....)))))).))))))))))............-.((((....))))....... ( -35.90, z-score = -2.12, R) >droEre2.scaffold_4929 7237679 114 - 26641161 CCAGCGGAGGUGUCAAGUCCAAAGAUACCAG------GAGGUGGAUUGCGGCACUUGGGAUGUUCUGAUGCGGACCAACGCCUCCGUAGUAUGAAUAUCCAUGGGAGAAUCCACACUUCU .....(((((((((((((((.((..((((..------..))))..))..)).)))))((((((((...((((((........))))))....))))))))...((.....)))))))))) ( -40.90, z-score = -1.70, R) >consensus CCAGCGGAGGUGUCAAUUCGAAAGAUACCAUAGCUACGAGGAGGAUUGCGGCACUUGUGAUGUUCUGAUGCGGACUAACACCUCUGCAAUAUGAAUAUUCAUGGGGUAAUCCACAUUUUG ......(((((((....((....)).................(((((((....((...(((((((...((((((........))))))....)))))))...)).)))))))))))))). (-25.66 = -25.60 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:20 2011