| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,175,729 – 3,175,785 |
| Length | 56 |
| Max. P | 0.770634 |
| Location | 3,175,729 – 3,175,785 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 96.43 |
| Shannon entropy | 0.06446 |
| G+C content | 0.25769 |
| Mean single sequence MFE | -7.80 |
| Consensus MFE | -7.04 |
| Energy contribution | -7.48 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.770634 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3175729 56 + 21146708 AAAAUUGGGUGAAGUGAAAAUUAUUUUACAGCAAGCUUAAUUAAAAGAAAACAGAA ..((((((((...((((((....)))))).....)))))))).............. ( -7.60, z-score = -1.64, R) >droSim1.chr2R 1929033 56 + 19596830 AAAAUUGGGUGAAGUGAAAAUUAUUUUACAGCAAGCUUAAUUAAAAGAAAACAGAA ..((((((((...((((((....)))))).....)))))))).............. ( -7.60, z-score = -1.64, R) >droSec1.super_1 819845 56 + 14215200 AAAAUUGGGUGAAGUGAAAAUUAUUUUACAGCAAGCUUAAUUAAAAGAAAACAGAA ..((((((((...((((((....)))))).....)))))))).............. ( -7.60, z-score = -1.64, R) >droYak2.chr2L 15860515 56 + 22324452 AAAAUUGGGUGAAGUGAAAAUUAUUUUACAGCAAGCUUAAUUAAAAGAAAACAGAA ..((((((((...((((((....)))))).....)))))))).............. ( -7.60, z-score = -1.64, R) >droEre2.scaffold_4929 7223256 52 - 26641161 AAAAUUGGGUGAAGUGAAAAUU----UACAGCAAGCCUAAUUAAAAGAAAACAGAA ..((((((((...((((....)----))).....)))))))).............. ( -8.60, z-score = -2.26, R) >consensus AAAAUUGGGUGAAGUGAAAAUUAUUUUACAGCAAGCUUAAUUAAAAGAAAACAGAA ..((((((((...((((((....)))))).....)))))))).............. ( -7.04 = -7.48 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:18 2011