| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,165,800 – 3,165,871 |
| Length | 71 |
| Max. P | 0.921070 |
| Location | 3,165,800 – 3,165,871 |
|---|---|
| Length | 71 |
| Sequences | 7 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 61.32 |
| Shannon entropy | 0.80582 |
| G+C content | 0.48111 |
| Mean single sequence MFE | -18.34 |
| Consensus MFE | -7.10 |
| Energy contribution | -7.61 |
| Covariance contribution | 0.51 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.921070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3165800 71 + 21146708 UACAAUAUGUUUUUUGGGGAGCCGUGCAGCACUGCUUUCUAGAGAUGGUAGUGGCGGGAACGUAUUGGAAC ..((((((((((((.((....))..((..(((((((.((....)).))))))))))))))))))))).... ( -24.10, z-score = -3.41, R) >droSim1.chr2R_random 651683 71 + 2996586 UACAAUAUGUUUAUUGGGGAGCCUUGCAGCACUGCUUGCUAGAGAUGGUAGUGGCGGGAGCGUAAUGGAAC ..(((((....)))))....(((((((..(((((((..(....)..)))))))))))).)).......... ( -18.50, z-score = -0.69, R) >droSec1.super_1 809968 71 + 14215200 UACAAUAUGUUUAUUGGGGAGCCUUGCAGCACUGCUUGCUAGAGAUGGUAGUGGCGGGAGCGUAAUGGAAC ..(((((....)))))....(((((((..(((((((..(....)..)))))))))))).)).......... ( -18.50, z-score = -0.69, R) >droYak2.chr2L 15850749 71 + 22324452 AACAAUUCGCGCUUUGUGGAGCUUCGCAGCACUGCUGGCUAGAGAUGGUAGUGGCGGGUGUCUACUAGAAC ...........((..(((((..(((((..(((((((..(....)..))))))))))))..))))).))... ( -18.80, z-score = 0.73, R) >droEre2.scaffold_4929 7213077 71 - 26641161 UACAAUUUGCGUUUUGUGAAGUUUCGCAGCACUGCUGUCUAGAGAUGGUAGUGGCGGGAGCCUAUUGGAAC ..((((..((...((((((....))))))((((((((((....))))))))))......))..)))).... ( -22.40, z-score = -1.81, R) >droAna3.scaffold_13266 3379095 54 + 19884421 -----------------CACGUUUUUCAACUCUACCAAAUAGGGAUGGUGGUUGUAGUAAUUUCAUGGAAC -----------------...........((.((((((........))))))..))................ ( -6.90, z-score = 0.85, R) >droMoj3.scaffold_6496 22167458 56 - 26866924 --CAUGAGACGUCAUUUGACGUUUUACAGCACUGCAAACACGAG-CAGCUGCAACGAGC------------ --..(((((((((....)))))))))..(((((((........)-))).))).......------------ ( -19.20, z-score = -3.38, R) >consensus UACAAUAUGCGUUUUGGGGAGCUUUGCAGCACUGCUUGCUAGAGAUGGUAGUGGCGGGAGCGUAAUGGAAC ......................(((((..(((((((..........))))))))))))............. ( -7.10 = -7.61 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:18 2011