| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,145,996 – 3,146,100 |
| Length | 104 |
| Max. P | 0.825487 |
| Location | 3,145,996 – 3,146,100 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 79.50 |
| Shannon entropy | 0.33272 |
| G+C content | 0.45599 |
| Mean single sequence MFE | -15.75 |
| Consensus MFE | -12.82 |
| Energy contribution | -13.07 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.825487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3145996 104 + 21146708 CCCCCCCCCCCCCCCACCAUACACAAAGACCAGGCCAUAUAACACCAACUUGUUAUUUAUGCGUCAAGUGCUGAAAGAUCUGAAUCGAUCAGAAACGAAUUCGA .....................(((...(((((......((((((......))))))...)).)))..)))((((..(((....)))..))))...((....)). ( -13.50, z-score = -1.06, R) >droEre2.scaffold_4929 7200250 97 - 26641161 -----AUAACCCAACCAUAUAACCCCAUCCCAUGCCAUAGAACAGCAACUUGUUAUUUAUGCGUCAAGUGCUGA--GAUCUGAAUCGCUCAGAAACGAAUUCGA -----..................................((((((((.((((............))))))))).--..(((((.....)))))......))).. ( -15.00, z-score = -1.12, R) >droSec1.super_1 797315 95 + 14215200 ---------CCCCCCUCCCCCUCAAAUGCCCUGGCCAUAUAACAGCAACUUGUUAUUUAUGCGUCAAGUGCUGAGAGAUCUGAAUCGAUCAGAAACGAAUUCGA ---------...........(((....((....)).......(((((.((((............))))))))).))).(((((.....)))))..((....)). ( -19.10, z-score = -1.77, R) >droSim1.chr2R_random 635880 94 + 2996586 ----------CCCCCUCCCCCUGAAAAACCCUAGCCAUAUAACAGCAACUUGUUAUUUAUGCGUCAAGUGCUGAGAGAUCUGAAUCGAUCAGAAACGAAUUCGA ----------....(((...(((........)))........(((((.((((............))))))))).))).(((((.....)))))..((....)). ( -15.40, z-score = -1.60, R) >consensus _________CCCCCCUCCACAUCAAAAGCCCAGGCCAUAUAACAGCAACUUGUUAUUUAUGCGUCAAGUGCUGAGAGAUCUGAAUCGAUCAGAAACGAAUUCGA ..........................................(((((.((((............))))))))).....(((((.....)))))..((....)). (-12.82 = -13.07 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:17 2011