| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,274,059 – 2,274,170 |
| Length | 111 |
| Max. P | 0.916794 |
| Location | 2,274,059 – 2,274,170 |
|---|---|
| Length | 111 |
| Sequences | 10 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 65.53 |
| Shannon entropy | 0.68803 |
| G+C content | 0.46681 |
| Mean single sequence MFE | -29.61 |
| Consensus MFE | -9.92 |
| Energy contribution | -10.26 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.916794 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2274059 111 + 23011544 -----UUUUCUCCGCCGGCUCCUUCUGCUUUUCGUUCUGCGUUUUUAU-UCUGCACAACGUGGCGUAUGGGCAACUUAUUUGCCAUCUGUCGUGGCUGGCUUGAGAAAUGAAAUGAA -----.((((((.((((((..(....(((...((((.((((.......-..)))).)))).))).....(((((.....))))).......)..))))))..))))))......... ( -34.70, z-score = -2.70, R) >droSim1.chr2L 2232649 111 + 22036055 -----UUUUCUCCGCCGGCUCCUUCUGCUCUUCGUUCUGCGUUUUUCU-UCCGCACAACGUGGCGUAUGGGCAACUUAUUUGCCAUCUGUCAUGGCUGGCUUGAGAAAUGAAAUGAA -----.((((((.(((((((.............(((.((((.......-..)))).)))((((((.((((.(((.....))))))).)))))))))))))..))))))......... ( -35.00, z-score = -2.78, R) >droSec1.super_5 448859 111 + 5866729 -----UUUUCUCCGCCGGCUCCUUCUGCUUUUUGUUCUGCGUUUUUCU-UCUGCACAACGUGGCGUAUGGGCAACUUAUUUGCCAUCUGUCGUGGCUGGCUUGAGAAAUGAAAUGAA -----.((((((.((((((..(...........(((.((((.......-..)))).)))((((((...((....))....)))))).....)..))))))..))))))......... ( -33.00, z-score = -2.25, R) >droEre2.scaffold_4929 2311122 110 + 26641161 -----UUUUCUCCGCCGGCUCCUUCUGCUCUUCGUUCUGCGUUUUUCU-UCUGCACAACGUGGCGUAUGGGCAACUUAUUUGCCAUCUGUCGUGGCUGGCU-GAGAAAUGAAAUGAA -----.((((((.((((((..(...(((.((.((((.((((.......-..)))).)))).)).)))..(((((.....))))).......)..)))))).-))))))......... ( -36.00, z-score = -3.14, R) >droYak2.chr2L 2255356 112 + 22324452 -----UUUUCUCCGCUGGCUCCUUUUGCUUUUCGGUCUGCGUUUUUUCAUCUGCACAACGUGGCGUAUGGGCAACUUAUUUGCCAUCUGUCGUGGCUGGCUUGAGAAAUGAAAUGAA -----.((((((.((..((..(....(((...((...((((..........))))...)).))).....(((((.....))))).......)..))..))..))))))......... ( -29.00, z-score = -0.49, R) >droAna3.scaffold_12916 9988715 116 - 16180835 GGUUUUUCUCUCUUCUAUCCUUCCGUUUUGGUCGGGUCCUGCGUGUAC-GGUGCACAACGUGGCGUAUGAGCAACUUAUUUGCCAUCUGUCAUGGCUGGCUUGAGAAAUGAAAUGAA ....((((((......((((..((.....))..))))((.((((((..-...))))..(((((((.(((.((((.....))))))).))))))))).))...))))))......... ( -31.70, z-score = -0.74, R) >dp4.chr4_group3 7542073 90 - 11692001 ------------------CUUCCCAUCCCG--------CCACUUGUGG-UGUCUGCCGCACAGCGUAUGAGCAACUUAUUUGCCAUCUGUCAUGGCUGGCCUGAGAAAUGAAAUGAA ------------------.(((.((..(((--------(((..(((((-(....))))))..(((.(((.((((.....))))))).)))..)))).))..)).))).......... ( -23.20, z-score = -0.37, R) >droPer1.super_1 4649621 90 - 10282868 ------------------CUUCCCAUCCCG--------CCACUUGUGG-UGUCUGCCGCACAGCGUAUGAGCAACUUAUUUGCCAUCUGUCAUGGCUGGCCUGAGAAAUGAAAUGAA ------------------.(((.((..(((--------(((..(((((-(....))))))..(((.(((.((((.....))))))).)))..)))).))..)).))).......... ( -23.20, z-score = -0.37, R) >droVir3.scaffold_12963 13708375 87 + 20206255 -----------------------CUUGUCAGUUUUCUUUUACAUGUCUGACGGCACUACAUGGCGUAUGCGCAAUGCAUUUGCCAUGUGUCAUAGAUA--CGAAAGAAUUAA----- -----------------------..........(((((((...((((((..(((((...((((((.((((.....)))).))))))))))).))))))--.)))))))....----- ( -25.90, z-score = -2.41, R) >droGri2.scaffold_15126 2235935 87 - 8399593 -----------------------CUUGCCACUUUUCUUUUCUGUUUCUGACGGCACUACGUGGCUUAUAUGUAACUUAUUUGCCAUGUGUCAUAGAUA--CGGAGAAAUGAA----- -----------------------.............((((((((.((((..(((((...(((((..(((.......)))..)))))))))).)))).)--))))))).....----- ( -24.40, z-score = -3.47, R) >consensus _____UUUUCUCCGC_GGCUCCUCCUGCUGUUCGUUCUGCGUUUUUCU_UCUGCACAACGUGGCGUAUGGGCAACUUAUUUGCCAUCUGUCAUGGCUGGCUUGAGAAAUGAAAUGAA ..........................................................(((((((.(((.((((.....))))))).)))))))....................... ( -9.92 = -10.26 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:41 2011