| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,133,810 – 3,133,920 |
| Length | 110 |
| Max. P | 0.686838 |
| Location | 3,133,810 – 3,133,920 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 68.12 |
| Shannon entropy | 0.61170 |
| G+C content | 0.37871 |
| Mean single sequence MFE | -24.99 |
| Consensus MFE | -9.31 |
| Energy contribution | -10.29 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.686838 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3133810 110 - 21146708 ACCAUAAUGUAUUCUCUUAUUUAUCGUGGGGCUUUUGGCAAGGGAGUU-UCGGUUAUCUGAGCGAGCAACGUUCUUUCCAAAUAAUUAGGUCUUGUCUCGCAUUAAAUAAU ................(((((((..(((((((.(((((.(((((((((-(((.((....)).)))..))).)))))))))))............)))))))..))))))). ( -23.52, z-score = -0.83, R) >droAna3.scaffold_13266 3353397 99 - 19884421 --UUUAAUC--UUGUCCUCUUU-UUGCUAAAGUGUUGGUAUAAGAGUUGGUUGGGGUCCACGCCAGAUAUGUGAUUCCCGGAGAUUAAAGCUUUAUUAAAUGUU------- --(((((((--((...(((((.-.((((((....)))))).))))).....(((((..((((.......))))..))))))))))))))...............------- ( -24.30, z-score = -1.50, R) >droEre2.scaffold_4929 7188415 108 + 26641161 --ACUAUUGUAUUCUUUUAUUUAUCGUGGGGCUUCAGGCAAGGGAACU-UCGGUUAUCCAAGCGAGAAAGGUUCUUCCCGAAUAAUUAGGUCUUGUCUCGCAUUAAAUAAU --..............(((((((..(((((((...((((..((((((.-...))).)))...((.(((......))).)).........)))).)))))))..))))))). ( -25.70, z-score = -1.18, R) >droYak2.chr2L 15826161 87 - 22324452 --UAUAAUGCAUU-UUUUAUUUAUCGUUGGGCUUUUGGCAAGGGGAUU-UCGGUUAU--------------------CCGAAUAAAUAGGUCUUGUCUUGCAUUAAAUAAU --..(((((((..-.((((((((((.((..((.....))..)).)).(-((((....--------------------)))))))))))))........)))))))...... ( -17.90, z-score = -1.41, R) >droSec1.super_1 785393 106 - 14215200 ACCAUAA----UUCUCUUAUUUAUUGCGGGGCUUCAGGCAAGGGAGUU-UCGGUUAUCUGAGCGAGCAACGUUCUUCCCAAAUAAUUAGGUCUUGUCUCGCAUUAAGUAAU .......----.....(((((((.((((((((...((((..(((((((-.(((....))))))((((...)))).))))..........)))).)))))))).))))))). ( -28.90, z-score = -2.26, R) >droSim1.chr2R 1914055 110 - 19596830 ACCAUAAUGUAUUCUCUUAUUUAUUGCGGGGCUUUAGGCAAGGGAGUU-UCGGUUAUCUGAGCGAGCAACGUUCUUCCCAAAUAAUUAGGUCUUGUCUCGCAUUAAAUAAU ................(((((((.((((((((...((((..(((((((-.(((....))))))((((...)))).))))..........)))).)))))))).))))))). ( -29.60, z-score = -2.37, R) >consensus __CAUAAUGUAUUCUCUUAUUUAUCGCGGGGCUUUAGGCAAGGGAGUU_UCGGUUAUCUGAGCGAGCAACGUUCUUCCCAAAUAAUUAGGUCUUGUCUCGCAUUAAAUAAU ................(((((((..(((((((....(((..(((((............................)))))..........)))..)))))))..))))))). ( -9.31 = -10.29 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:15 2011