| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,123,740 – 3,123,832 |
| Length | 92 |
| Max. P | 0.954768 |
| Location | 3,123,740 – 3,123,832 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 57.33 |
| Shannon entropy | 0.82271 |
| G+C content | 0.49354 |
| Mean single sequence MFE | -25.55 |
| Consensus MFE | -10.82 |
| Energy contribution | -10.55 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.86 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.954768 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3123740 92 + 21146708 -CGACCUAGCAAUGGGUGCGAUAAAUUUGAGAAAAUGAGGAAAGUAGCAGGUGUUGAGCCAGGAG--AAUUACGCUCCCAACUCCGCGCCAGCUG- -(((((((....))))).))........................((((.(((((.(((...((((--.......))))...))).))))).))))- ( -27.10, z-score = -1.60, R) >droYak2.chrU 8888243 93 - 28119190 GCCGCUCUCGGAAGAGCUGAACGGAUUCGAGAGGAUGAAGAAAAUCGCUGGA-ACACUCCAGCAG--AGAUACGAGCUAUGAUUGCCUCAAGGCAA ((((((((((((....((....)).))))))))(((.......)))((((((-....))))))..--.....)).)).....(((((....))))) ( -29.40, z-score = -1.51, R) >droSim1.chr2L 20995011 94 + 22036055 ACGGCUCUCGGAAGAGCUGAACUGAUUCGAGAAGAUGAAGAAAAUCGCUGGACAUACUCCAGCAG--AGAUACGAGCUAUGAUUGCCUCAAGGCAA .(((((((....)))))))......((((....(((.......)))((((((.....))))))..--.....))))......(((((....))))) ( -28.80, z-score = -2.04, R) >droSec1.super_1989 487 94 - 3922 ACCGCUCUCGGAAGAGCUGAACCGAUUCGAGAAGAUGAAGAAAAUCGCUGGACAUACUCCAGCAG--AGAUACGAGCCAUGAUUGCCUCAAGGCAA ...((((((((..........))))(((.....(((.......)))((((((.....)))))).)--))....)))).....(((((....))))) ( -26.10, z-score = -1.49, R) >droMoj3.scaffold_6540 33835853 96 - 34148556 GCUUCUUAGUGAGAGAAGCUCGAAGACAGAGACGAUGAGGAAGAUAUCGUACGCUGACCCUGCUACUAUGCACUUACGCACCCAGCUUCUAAGCAA ........((...((((((((((((.(((..((((((.......))))))...)))....(((......)))))).)).....)))))))..)).. ( -22.60, z-score = -0.28, R) >droPer1.super_28 45132 88 + 1111753 CUAGCUUGGUGAUAAGCUUACAGCGACUGACAAGAUGAGGAAAAUAGCUGG---UGAACCUGCAG--AAUUAAGUGCCA-GCUUGGCUGAAGAC-- ..((((((....))))))..((((..((....))...........((((((---(..........--........))))-)))..)))).....-- ( -19.27, z-score = 0.03, R) >consensus ACCGCUCUCGGAAGAGCUGAACAGAUUCGAGAAGAUGAAGAAAAUAGCUGGA_AUAAUCCAGCAG__AGAUACGAGCCAUGAUUGCCUCAAGGCAA ...(((((....))))).............................((((((.....)))))).....................(((....))).. (-10.82 = -10.55 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:14 2011