| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,113,885 – 3,113,989 |
| Length | 104 |
| Max. P | 0.863002 |
| Location | 3,113,885 – 3,113,989 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 89.15 |
| Shannon entropy | 0.18747 |
| G+C content | 0.48482 |
| Mean single sequence MFE | -31.42 |
| Consensus MFE | -24.86 |
| Energy contribution | -25.66 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.863002 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3113885 104 - 21146708 GAGAGAGCCACUGCGUCCGCACAUGAUUAUUAUUAGUUAUGAUGAUGUAUCCCUUUAAUGGUUCCGAAUGGGGAGUUUGGACGUGACCGAAGGAUUGGAGGUAG ......(((...((((((.((((((((((....)))))))).)).....(((((....((....))...)))))....))))))..((((....)))).))).. ( -29.30, z-score = -1.48, R) >droSim1.chr2R_random 599039 95 - 2996586 GAGGGAGCCACUGCGUCCGCACAUGAUUAUUAUUAGUUAUGAUGAUGUAUCCCUUUAAUGGUUCCGAAUGGGGAGUGUGGACGUGACCGGUGGAU--------- .......(((((((((((((((...((((((((.....))))))))...(((((....((....))...)))))))))))))))....)))))..--------- ( -35.40, z-score = -3.01, R) >droSec1.super_1 770282 95 - 14215200 GAGGGAGCCACUGCGUCCGCACAUGAUUAUUAUUAGUUAUGAUGAUGUAUCCCUUUAAUGGUUCCGAAUGGGGAGUGUGGACGUGACCGGUGGAU--------- .......(((((((((((((((...((((((((.....))))))))...(((((....((....))...)))))))))))))))....)))))..--------- ( -35.40, z-score = -3.01, R) >droYak2.chr2L 15811156 95 - 22324452 GAGCGAGCCACUGCCUCCCCACAUGAUUAUUAUUAGUUAUGAUGAUGUAUCCCUUUAAUGCCGCCGAAUGGGGAGUGUGGACGUGACCGGAGGAU--------- ..(((..((((...(((((((((((((((....)))))))).....((((.......)))).......))))))).)))).)))...........--------- ( -27.20, z-score = -1.25, R) >droEre2.scaffold_4929 7172922 90 + 26641161 CAGGCAGCCACUCCGUCCGCACAUGAUUAUUAUUAGUUAUGAUGAUGUAUCCCUUUAAUGGUUCCGAAUGGGGAGUGUGGACGUGACCGG-------------- .......((..(((((((((((...((((((((.....))))))))...(((((....((....))...)))))))))))))).))..))-------------- ( -29.80, z-score = -1.86, R) >consensus GAGGGAGCCACUGCGUCCGCACAUGAUUAUUAUUAGUUAUGAUGAUGUAUCCCUUUAAUGGUUCCGAAUGGGGAGUGUGGACGUGACCGGAGGAU_________ ............((((((((((...((((((((.....))))))))...(((((....((....))...))))))))))))))).................... (-24.86 = -25.66 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:10 2011