| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,068,444 – 3,068,537 |
| Length | 93 |
| Max. P | 0.891781 |
| Location | 3,068,444 – 3,068,537 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 58.20 |
| Shannon entropy | 0.64332 |
| G+C content | 0.34516 |
| Mean single sequence MFE | -21.90 |
| Consensus MFE | -10.20 |
| Energy contribution | -10.95 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.891781 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3068444 93 - 21146708 -------AAUAGUGAUUGGUCUUGGCUACUCGAUAAGCGAUACUCAGUU-AAGGAUUGGCAUGUAAUUGGAUAUUGAUGAUCACAACUAAUACAGUUCGAU------------- -------..((((((.((((....)))).))(((...(((((..(((((-(..(.....)...))))))..)))))...)))...))))............------------- ( -18.40, z-score = -0.13, R) >droYak2.chr2L 15777160 94 - 22324452 -------AAAAGUGAUAGGUAUCGACUACUCGAUACGCGAUACUUAUCUGAAAGUUUGUCAUGUACUCGGAUAUCGAUGAGCAAAACAAAAUCAGUUAAAU------------- -------..(((((...((((((((....))))))).)..)))))..((((...(((((..(((.((((.....))).).)))..))))).))))......------------- ( -21.00, z-score = -1.58, R) >droSec1.super_1 736885 95 - 14215200 -----------------GGUACUGA-UACUCGAUAAGCGAUACUCAGUU-AAAGAUUGGUUUGUAAUUGUUUAUUGAUUAAUAUAGUACAGCGUUUUUGCUAAUUUAGUUGGAC -----------------.((((((.-((.((((((((((((((((((((-...))))))...)).)))))))))))).))...))))))((((....))))............. ( -20.90, z-score = -1.64, R) >droSim1.chr2R 1866228 112 - 19596830 AGUACUGAUUGCUUUUGGGUAUAAG-CGGUCGAUAAGCGGUACUCAGUU-AAAGAUUGGUUUGUAAUUGUUUAUUGAUUAAAAUAGUACAGCGUUUUUGCUAAUUUAGUUGGCC .((((((...((((........)))-)((((((((((((((((((((((-...))))))...)).))))))))))))))....)))))).........((((((...)))))). ( -27.30, z-score = -1.68, R) >consensus _______AAUAGUGAU_GGUAUUGA_UACUCGAUAAGCGAUACUCAGUU_AAAGAUUGGCAUGUAAUUGGAUAUUGAUGAACAUAACAAAGCCAGUUUGAU_____________ .............................((((((((((((((.(((((....)))))....))).)))))))))))..................................... (-10.20 = -10.95 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:08 2011