| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,060,319 – 3,060,416 |
| Length | 97 |
| Max. P | 0.535177 |
| Location | 3,060,319 – 3,060,416 |
|---|---|
| Length | 97 |
| Sequences | 12 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 70.00 |
| Shannon entropy | 0.64626 |
| G+C content | 0.49721 |
| Mean single sequence MFE | -20.90 |
| Consensus MFE | -11.46 |
| Energy contribution | -11.29 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.15 |
| Mean z-score | -0.39 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.535177 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3060319 97 + 21146708 CCCCAACUAUUGGGAUGCGCCCCCCAAGGCCAUCAUCAAAUCCGCCGAAGUCAGGUAAACAAGCGAAU-------GAGUCCAAGCAGCGACAUGCUGCGUGCUG .........((((((((.(((......))))))).........(((.......)))............-------....))))(((((.....)))))...... ( -23.80, z-score = 0.11, R) >droSim1.chr2R 1857988 92 + 19596830 CCCCAACUAUUGGGAUGCGCCCCCCAAGGCCAUCAUCAAGUCCGCCGAAGUCAGGUAAACAAGCGAAU-------GAGUCCAAGCAGCGAUAUGCUGCG----- .........((((((((.(((......))))))).....((..(((.......)))..))........-------....))))(((((.....))))).----- ( -25.10, z-score = -1.28, R) >droSec1.super_1 727502 92 + 14215200 CCCCAACUAUUGGGAUGCGCCCCCCAAGGCCAUCAUCAAGUCCGCCGAAGUCAGGUAAACAAGCGAAU-------GAGUCCAAGCAGCGAUAUGCUGCG----- .........((((((((.(((......))))))).....((..(((.......)))..))........-------....))))(((((.....))))).----- ( -25.10, z-score = -1.28, R) >droYak2.chr2L 15769081 92 + 22324452 CCCCCACUAUUGGGAUGCGCCCCCAAAGGCCAUUAUCAAGUCCGCCGAAGUCAGGUAAACAAGCGAAU-------GAGUCGAAGCAAGGAUAUGCUGCA----- ..((((....)))).(((.........(((((((.....((..(((.......)))..)).....)))-------).)))..((((......)))))))----- ( -19.50, z-score = 0.86, R) >droEre2.scaffold_4929 7131948 92 - 26641161 CCCCAACUAUUGGGAUGCGCCCCCCAAGGCCAUCAUCAAGUCCGCCGAAGUCAGGUAAACAAGCGAAU-------GAGUCCAAUAUGCGAUAUGCUGCG----- .......((((((((((.(((......))))))).....((..(((.......)))..))........-------....)))))).(((......))).----- ( -20.30, z-score = 0.18, R) >droAna3.scaffold_13266 3298181 99 + 19884421 CCCCAACUAUUGGGAUGCGCCGCCCAAGGCCAUCAUCAAGUCGGCCGAAGUCAGGUAAACAAAAAACUCCCCCUGGGAGUCAGCCAGCAACAUGCAAUA----- .((((.....)))).((((((......((((..(.....)..)))).......))).........((((((...))))))......)))..........----- ( -26.82, z-score = -0.70, R) >dp4.chr3 1350963 99 + 19779522 UCCCAACUAUUGGGAUGCACCGCCCAAGGCCAUCAUCAAGUCGGCCGAAGUGAGGUAAAUAUCAAAAGGAAAUGCUAAACCAAGAAAAACUACACUGCG----- (((((.....))))).(((..(((((.((((..(.....)..))))....)).)))...........((..........))..............))).----- ( -20.40, z-score = -0.44, R) >droPer1.super_2 1525239 99 + 9036312 UCCCAACUAUUGGGAUGCACCGCCCAAGGCCAUCAUCAAGUCGGCCGAAGUGAGGUAAAUAUCAAAAGGAAAUGCUAAACCAAGAAAAACUACACUGUG----- (((((.....)))))(((..(((....((((..(.....)..))))...)))..)))..........................................----- ( -19.20, z-score = 0.07, R) >droWil1.scaffold_180700 2667879 73 + 6630534 CCCCAACUAUUGGGAUGCACCGCCCAAGGCCAUUAUCAAAUCGGCUGAAGUGAGGUAAACACUAAAAU-------GAUUU------------------------ .((((.....)))).(((..(((....(((((((....))).))))...)))..)))...........-------.....------------------------ ( -15.50, z-score = -0.34, R) >droVir3.scaffold_10324 1235911 86 + 1288806 GCCCAACUAUUGGGAUGCACCGCCCAAGGCGAUAAUCAAAUCGGCUGAAGUGAGGUAAAUAAACAAAAUUAUUCGA--AACUUUCAAA---------------- .((((.....)))).(((..(((...((.((((......)))).))...)))..)))...................--..........---------------- ( -17.30, z-score = -0.72, R) >droMoj3.scaffold_6496 22059387 88 - 26866924 GCCCAACUAUUGGGAUGCGCCACCCAAGGCGAUCAUCAAAUCGGCUGAAGUGAGGUAAAUAAAUAAAAGCCUACAACAAACUUUCAAA---------------- (((......(((((((.((((......))))))).))))...)))....((.((((............))))...))...........---------------- ( -17.30, z-score = -0.49, R) >droGri2.scaffold_15245 9318244 96 + 18325388 GCCCAACUAUUGGGAUGCCCCGCCUAAGGCGAUCAUCAAAUCCGCCGAAGUUAGGUAAUUAAACAAAAGUGUAACA---ACUUGCAAGUAUUUGUACUG----- (((.((((...(((....)))......((((...........))))..)))).)))......(((((..(((((..---..)))))....)))))....----- ( -20.50, z-score = -0.70, R) >consensus CCCCAACUAUUGGGAUGCGCCGCCCAAGGCCAUCAUCAAGUCCGCCGAAGUCAGGUAAACAAGCAAAU_______GAGUCCAAGCAACGAUAUGCUGCG_____ .((..(((.(((((........)))))(((.............)))..)))..))................................................. (-11.46 = -11.29 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:06 2011