| Sequence ID | dm3.chr2R |
|---|---|
| Location | 3,023,764 – 3,023,872 |
| Length | 108 |
| Max. P | 0.663391 |
| Location | 3,023,764 – 3,023,872 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 81.09 |
| Shannon entropy | 0.30528 |
| G+C content | 0.53980 |
| Mean single sequence MFE | -25.91 |
| Consensus MFE | -21.08 |
| Energy contribution | -21.08 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663391 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 3023764 108 + 21146708 CCGAAACAAGUUCAAUGGCUCGGCUCCAGUGGAAGUCACAGCCCACCAACCCACCAACUCACCAGCACACUGCCACCAUGGAUUUUCCACUGAAAAGCCGGCAACACA .................((.(((((.(((((((((...........................(((....)))((.....))..)))))))))...)))))))...... ( -25.00, z-score = -0.91, R) >droSim1.chr2R 1822448 100 + 19596830 CCGAAACAAGUUCAAUGGCUCGGCUCCAGUGGAAGUCACAGCCCAC--------CAACAUACCAUCACCCUGCCUCCAUGGAUUUUCCACUGAAAAGCCGGCAACACA .................((.(((((.(((((((((...(((.....--------...............)))((.....))..)))))))))...)))))))...... ( -23.35, z-score = -0.86, R) >droSec1.super_1 693091 108 + 14215200 CCGAAACAAGUUCAAUGGCUCGGCUCCAGUGGAAGUCACAGCCCACCAAGCCACCAACCCACCAGCACCCUGCCUCCAUGGAUUUUCCACUGAAAAGCCGGCAACACA .................((.(((((.(((((((((.....((.......))..(((......(((....)))......)))..)))))))))...)))))))...... ( -26.20, z-score = -0.84, R) >droEre2.scaffold_4929 7097032 83 - 26641161 CCGAAACAAGUUCAAUGGCUCGGCUCCAGUGGAAGUC-------------------------CUGCCCUCUGGUUUUCUGGAUUUUCCACUGAAAAGCCGGCAACACA .................((.(((((.(((((((((((-------------------------(.(((....))).....))).)))))))))...)))))))...... ( -29.10, z-score = -2.39, R) >consensus CCGAAACAAGUUCAAUGGCUCGGCUCCAGUGGAAGUCACAGCCCAC________CAAC_CACCAGCACCCUGCCUCCAUGGAUUUUCCACUGAAAAGCCGGCAACACA .................((.(((((.(((((((((((...........................................)).)))))))))...)))))))...... (-21.08 = -21.08 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:05:01 2011