| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,982,118 – 2,982,216 |
| Length | 98 |
| Max. P | 0.929159 |
| Location | 2,982,118 – 2,982,216 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 86.62 |
| Shannon entropy | 0.29768 |
| G+C content | 0.49583 |
| Mean single sequence MFE | -35.81 |
| Consensus MFE | -28.07 |
| Energy contribution | -31.29 |
| Covariance contribution | 3.22 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.929159 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2982118 98 + 21146708 --------------CCGGGGGACGU-UGUCGUGAGACAAGUUUAUUUGGCUCAGUGCCGUGUUGACGUUUAAUAAAUUUACGAAUUGUGGCCGUGCGCGGCAUGUGGCCAAGA --------------.....((((.(-((((....))))))))).(((((((..(((((((((..(((..((...((((....)))).))..))))))))))))..))))))). ( -36.90, z-score = -2.56, R) >droSec1.super_1 651415 100 + 14215200 ------------AACCGGGGGACGU-UGUCGUGAGACAAGUUUAUUUGGCUCAGUGCCGUGUUGACGUUUAAUAAAUUUACGAAUUGUGGCCGUGCGCGGCAUGUGGCCAAGA ------------.......((((.(-((((....))))))))).(((((((..(((((((((..(((..((...((((....)))).))..))))))))))))..))))))). ( -36.90, z-score = -2.33, R) >droYak2.chr2L 15694405 101 + 22324452 -----------GAAACGAGGGACGU-UGUCGUGAGACAAGUUUAUUUGGCUCAGUGCCGUGUUGACGUUUAAUAAAUUUACGAAUUGUGGCCGUGCGCGGCAUGUGGCCAAGA -----------........((((.(-((((....))))))))).(((((((..(((((((((..(((..((...((((....)))).))..))))))))))))..))))))). ( -36.90, z-score = -2.83, R) >droEre2.scaffold_4929 7055842 103 - 26641161 ---------GAGGACCGGGGGACGU-UGUCGUGAGACAAGUUUAUUUGGCUCAGUGCCGUGUUGACGUUUAAUAAAUUUACGAAUUGUGGCCGUGCGCGGCAUGUGGCCGAGA ---------..........((((.(-((((....))))))))).(((((((..(((((((((..(((..((...((((....)))).))..))))))))))))..))))))). ( -36.60, z-score = -1.82, R) >droAna3.scaffold_13266 3219394 110 + 19884421 ---UACGACCGGGGAUGGGGCUGGUGUGUCGUGAGACAAGUUUAUUUGGCUCAGUGCCGUGUUGACGUUUAAUAAAUUUACGAAUUGUGGCCAUGCACGGCAUGUGGCCAAGA ---....(((((........))))).((((....))))......(((((((..(((((((((....(((.....((((....))))..)))...)))))))))..))))))). ( -37.00, z-score = -1.36, R) >droPer1.super_2 1440984 102 + 9036312 ----------CCGAGAACCGACUGU-UGUCGUGAGACAAGUUUAUUUGGCUCAGUGCCGUGUUGACGUUUAAUAAAUUUACGAAUUGUGGCCGUGCGCGGCAUGUGGCCAAGA ----------.........((((..-((((....))))))))..(((((((..(((((((((..(((..((...((((....)))).))..))))))))))))..))))))). ( -34.80, z-score = -2.30, R) >dp4.chr3 1265439 102 + 19779522 ----------CCGAGAACCGACUGU-UGUCGUGAGACAAGUUUAUUUGGCUCAGUGCCGUGUUGACGUUUAAUAAAUUUACGAAUUGUGGCCGUGCGCGGCAUGUGGCCAAGA ----------.........((((..-((((....))))))))..(((((((..(((((((((..(((..((...((((....)))).))..))))))))))))..))))))). ( -34.80, z-score = -2.30, R) >droWil1.scaffold_180700 2572144 99 + 6630534 -------------CUGUUGUGUUGU-UGUCGUGAGACAAGUUUAUUUCGCUCAGUGCCGUGUUGACGUUUAAUAAAUUUACGAAUUGUGGCCAUGCGCGGCAUGUGGCCAAGG -------------..(..(((...(-((((....)))))...)))..)(((..(((((((((....(((.....((((....))))..)))...)))))))))..)))..... ( -26.30, z-score = -0.13, R) >droVir3.scaffold_10324 1138168 103 + 1288806 --------CUGGCAAUCGAGGCAGU-UGUCGUGAGACAAGUUUAUUUGGCUCAGUGCCGUGUUGACGUUUAAUAAAUUUACGAAUUGUGGCCGUGCGCGGCAUGUGGCCAAA- --------(((.(......).)))(-((((....))))).....(((((((..(((((((((..(((..((...((((....)))).))..))))))))))))..)))))))- ( -37.00, z-score = -2.25, R) >droMoj3.scaffold_6496 21963841 112 - 26866924 CUUGCGGUCUUGUGGCGCAGGCAGU-UGUCGUGAGACAAGUUUAUUUGGCUCAGUGCCGUGUUGACGUUUAAUAAAUUUACGAAUUGUGGCCGUGCGCGGCAUGUGGCCAAGA ((((((.((....))))))))...(-((((....))))).....(((((((..(((((((((..(((..((...((((....)))).))..))))))))))))..))))))). ( -42.10, z-score = -2.10, R) >droGri2.scaffold_15245 9220550 103 + 18325388 --------CUGG-AAGCCCGGCAGU-UGUCGUGAGACAAGUUUAUUUGGCUCAGUGCCGUGUUGACGUUUAAUAAAUUUACGAAUUGUGGCCGUGCGCGGCAUGUGGGCAAUU --------((((-....))))...(-((((....))))).........((((((((((((((..(((..((...((((....)))).))..)))))))))))).))))).... ( -34.60, z-score = -1.40, R) >consensus ___________GGAACGGGGGCCGU_UGUCGUGAGACAAGUUUAUUUGGCUCAGUGCCGUGUUGACGUUUAAUAAAUUUACGAAUUGUGGCCGUGCGCGGCAUGUGGCCAAGA ..........................((((....))))......(((((((..(((((((((..(((..((...((((....)))).))..))))))))))))..))))))). (-28.07 = -31.29 + 3.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:57 2011