| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,927,234 – 2,927,328 |
| Length | 94 |
| Max. P | 0.810936 |
| Location | 2,927,234 – 2,927,328 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 70.91 |
| Shannon entropy | 0.56638 |
| G+C content | 0.50058 |
| Mean single sequence MFE | -27.14 |
| Consensus MFE | -12.52 |
| Energy contribution | -12.35 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2927234 94 - 21146708 UCUUUCUUUUACGAGAGUGAUGAUGAUGGUGACAGUUUUGUGGAAGAUUGCCUAGAAUGCUGUGAAUACCAGCAACGAUUCACCGAGUUGCUAU----- ((..((..((((....)))).)).)).(((((((((.((.(((........))).)).)))))...))))((((((..........))))))..----- ( -22.40, z-score = -1.08, R) >droSim1.chr2R 1727690 96 - 19596830 UCUUUAAUUUUCGAGAGUGACGAUGAU---GACAGUUCUGUGGAAGAUUGCCUAGAAUGCUGUGACUGCCAGCAACGAUUCACCGAGUUGGAUGCUUAU (((.((((((((.(.((.(((......---....))))).).))))))))...))).(((((.(....)))))).((((((...))))))......... ( -18.70, z-score = 0.81, R) >droSec1.super_1 595017 99 - 14215200 UCAUUCAUUUUCGAGAGUGACGAUGAUGGCGACAGUUCUGUGGAAGAUUGCCUAGAAUGCUGUGACUGCCAGCAACGAUUCACCGAGUUGGAUGCUUAA .((((((..((((...((((((.((.((((((((((((((.((.......))))))..)))))...))))).)).))..)))))))).))))))..... ( -27.40, z-score = -0.79, R) >droYak2.chr2L 16606986 93 + 22324452 UCGUCCAUUUACGAAAGUGACGAUGAUGGCGACAGUUCCGUGGAAGACUGUCUAGAAUGCUGCGAAUGUCAGCAGCGAUUCACGGAUUUGGAU------ (((.((((((((....))).....))))))))(((.((((((((((.....))....((((((........)))))).)))))))).)))...------ ( -32.70, z-score = -2.52, R) >dp4.chr4_group2 828849 81 - 1235136 ------------UAUGAGAGCGAUGACGGCGACAGUUCGGUGGAGGAUUGGCUGGAGUGCUGCGAGUGCCAGCAGAGAUUCACCGAACUGGAU------ ------------.......((.......))..((((((((((((...((.(((((...((.....)).))))).))..))))))))))))...------ ( -31.20, z-score = -3.37, R) >droPer1.super_8 893382 81 + 3966273 ------------UAUGAGAGCGAUGACGGCGACAGUUCGGUGGAGGAUUGGCUGGAGUGCUGCGAGUGCCAGCAGAGAUUCACCGAACUGGAU------ ------------.......((.......))..((((((((((((...((.(((((...((.....)).))))).))..))))))))))))...------ ( -31.20, z-score = -3.37, R) >droVir3.scaffold_12963 4479230 81 + 20206255 ---------GAGAGCGAAGACGGCGAUGGCGAUAGCUCUGUGGAUGAUUGGCUGGAGUGCUGCGAGUGCCAGCUACGUUUCACCCAAUUG--------- ---------.(((((.....((.(...).))...))))).(((.(((.(((((((...((.....)).)))))))....))).)))....--------- ( -22.80, z-score = 0.45, R) >droEre2.scaffold_4929 16102794 90 - 26641161 UCGUCCAUUUACGACAGUGACGAUGAUGGCGACAGUUCUGUGGAAGAUUGUCUAGAAUGCUGCGAGUGCCAGCAGCGAUUCACGGAAUUG--------- (((.(((((..((.......))..))))))))((((((((((((((.....))....((((((........)))))).))))))))))))--------- ( -30.70, z-score = -2.00, R) >consensus UC_U_CAUUUACGAGAGUGACGAUGAUGGCGACAGUUCUGUGGAAGAUUGCCUAGAAUGCUGCGAGUGCCAGCAACGAUUCACCGAAUUGGAU______ ................................((((((.(((((((.....))....(((((.(....))))))....))))).))))))......... (-12.52 = -12.35 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:54 2011