| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,920,268 – 2,920,364 |
| Length | 96 |
| Max. P | 0.810550 |
| Location | 2,920,268 – 2,920,364 |
|---|---|
| Length | 96 |
| Sequences | 11 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 64.40 |
| Shannon entropy | 0.72427 |
| G+C content | 0.41959 |
| Mean single sequence MFE | -19.89 |
| Consensus MFE | -8.63 |
| Energy contribution | -8.65 |
| Covariance contribution | 0.02 |
| Combinations/Pair | 1.23 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2920268 96 + 21146708 ---------AGAGUUAGAUGAUGUUCAAU-----AAUGAAAACC-AAUUAUUCCUUCACAGCUGAUUUGCGCCCUGUUGGCCUAUGUCCUGGCCAAUAGCAUCGUGAACCG ---------.(((((((.((.((...(((-----(((.......-.))))))....)))).)))))))(((..(((((((((........)))))))))...)))...... ( -25.00, z-score = -2.47, R) >droEre2.scaffold_4929 6995492 95 - 26641161 ----------UAACUACAUGUUGUUCACU-----AGUGAAAACC-AAUGCUUACUCCACAGAUCAUUUGCGCCCUGUUGGCCUAUGUCCUGGCCAAUAGCAUCGUGAACCG ----------............((((((.-----.(((......-...........)))..............(((((((((........)))))))))....)))))).. ( -22.73, z-score = -1.83, R) >droYak2.chr2L 15633758 101 + 22324452 ---------UAAGCUAGAUGUUGUUCAACCAUUGAUUGAUAACC-AAUGCUUCCUCCACAGAUCAUCUGCGCCCUGUUGGCCUAUGUCCUGGCCAAUAGCAUCGUGAACCG ---------...((((((((((((.....(((((.........)-))))........))))..)))))).)).(((((((((........)))))))))............ ( -23.92, z-score = -1.55, R) >droAna3.scaffold_13266 3162009 91 + 19884421 ------------------UAAUUAGAAUCUGUUUAGUAACAUUUUUAUU--UUGAUUUCAGAUUAUUUGUGCCCUGCUGGCCUAUGUGCUGGCCAACAGCAUUGUGAAUCG ------------------.(((((((((.((((....)))).....)))--))))))...((((....((((..((.(((((........))))).))))))....)))). ( -20.50, z-score = -1.42, R) >droSec1.super_1 588191 96 + 14215200 ---------AGAGCUAGAUGAUUUUCAAU-----AAUGAAAACC-AAUGAUUCCUUCACAGCUGAUUUGCGCCCUGUUGGCCUAUGUCCUGGCCAAUAGCAUCGUGAACCG ---------..((((...((.((((((..-----..)))))).)-).(((.....))).))))(.((..((..(((((((((........)))))))))...))..)).). ( -27.30, z-score = -3.05, R) >droSim1.chr2R 1720328 95 + 19596830 ---------AGAGCUAGAUGAUGUUCAAU-----AAUGAAAAC--AAUGAUUCCUUCACAGCUGAUUUGCGCCCUGUUGGCCUAUGUCCUAGCCAAUAGCAUCGUGAACCG ---------.((((........))))...-----.........--.........(((((.((......))...((((((((..........))))))))....)))))... ( -20.20, z-score = -0.89, R) >dp4.chr3 1199390 85 + 19779522 -------------------AAUUCGCAUUUAUGU--UUUCACU---CUU--UCAUUUGUAGAUCAUUUGCGCCCUGCUGGCCUAUGUCCUCGCCAACAGCAUUGUGAAUCG -------------------.(((((((.......--.......---...--......(((((...)))))...(((.((((..........)))).)))...))))))).. ( -13.90, z-score = -0.20, R) >droPer1.super_2 1367604 85 + 9036312 -------------------AAUUCGCAUUUAUGU--UUUCACU---CUU--UCAUUUGUAGAUCAUUUGCGCCCUGCUGGCCUAUGUCCUCGCCAACAGCAUUGUGAAUCG -------------------.(((((((.......--.......---...--......(((((...)))))...(((.((((..........)))).)))...))))))).. ( -13.90, z-score = -0.20, R) >droVir3.scaffold_10324 1067080 106 + 1288806 UAAAUCUGUUGCUUUGCUCAAUUUGAAUUAAUUU-GUUGCACU--CGUU--UCUGUUCCAGAUCAUUUGCGCACUGCUCGCCUAUGUGCUGGCCCACAGCAUUGUGAAUCG ..........((..(((.(((..(((.....(((-(..(((..--....--..)))..))))))).))).)))..))((((....((((((.....)))))).)))).... ( -23.50, z-score = -0.65, R) >droMoj3.scaffold_6496 21891659 107 - 26866924 ----UAAAUGAAACUGCUCCAUAAAAGAUUAAUGCUUUGUUUUCAUAUUGUUUUUCUACAGAUCAUUUGCGCACUGCUCGCCUAUGUGCUGGCCAAUAGCAUUGUGAAUCG ----((((((((((.((................))...)))......((((......)))).)))))))((((.((((.(((........)))....)))).))))..... ( -17.69, z-score = 0.75, R) >droGri2.scaffold_15245 9149030 94 + 18325388 --------------UAUUUUAGUC-AACUUAUUCUAUAAUAUUCCAUUU--UUAUUUACAGAUCAUUUGCGCACUUCUGGCUUAUGUGCUGGCCAAUAGUAUUGUUAAUCG --------------.......(((-((.....(((..((((........--.))))...)))....))).))(((..(((((........)))))..)))........... ( -10.10, z-score = 0.74, R) >consensus ___________A_CUAGAUGAUUUUCAAUUAUU_AAUGAAAAUC_AAUU_UUCCUUUACAGAUCAUUUGCGCCCUGCUGGCCUAUGUCCUGGCCAAUAGCAUUGUGAAUCG .................................................................((((((..(((.((((..........)))).)))...))))))... ( -8.63 = -8.65 + 0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:50 2011