| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,900,092 – 2,900,187 |
| Length | 95 |
| Max. P | 0.992837 |
| Location | 2,900,092 – 2,900,187 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 74.69 |
| Shannon entropy | 0.48427 |
| G+C content | 0.50545 |
| Mean single sequence MFE | -23.42 |
| Consensus MFE | -17.19 |
| Energy contribution | -17.50 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.57 |
| SVM RNA-class probability | 0.992837 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2900092 95 + 21146708 ---GCGGCGCGUAUGCUGCGCUUCCUCUUCUCCUUGACAAAGUGCAGUGAACUUUUCC--CAUUUUCCCCACUUGAAUCUUCGAGUCCCAUUGACGCGGC ---..(.(((((..(((((((((..((........))..)))))))))..........--..........((((((....)))))).......))))).) ( -27.00, z-score = -2.44, R) >droSim1.chr2R 1700679 95 + 19596830 ---GUGAAGCGUAUGCUGCGCUUCCUCUUCUCCUUGACAGAGUGCAGUGAACUUUUCC--CAUUUUCCCCACUUGAAUCUUCGAGCCCCAUUGACGCGGC ---.....((((..(((((((((..((........))..)))))))))..........--...........(((((....)))))........))))... ( -23.30, z-score = -1.42, R) >droSec1.super_1 565720 95 + 14215200 ---GUGAAGCGUAUGCUGCGCUUCCUCUUCUCCUUGACAGAGUGCAGUGAACUUUUCC--CAUUUUCCCCACUUGAAUCUUCGAGCCCCAUUGACGCGGC ---.....((((..(((((((((..((........))..)))))))))..........--...........(((((....)))))........))))... ( -23.30, z-score = -1.42, R) >droYak2.chr2L 15614826 94 + 22324452 --GGAAAAGCGUAUGCUGCGCUUCCUCUUCUCCUUGACAAAGUGCAGUGAACUUUUCC--C--UUUUCCCACUUGAAUCUUCGAGUCCCAUUGACGCGGC --(((((((....((((((((((..((........))..))))))))))..)))))))--.--.......((((((....)))))).............. ( -25.10, z-score = -2.06, R) >droEre2.scaffold_4929 6975441 93 - 26641161 ----GAAAGCGUAUGCUGCGCUUCCUCUUCUCCUUGACAAAGUGCAGUGAACUUUUCC--CAUUU-CCCCACUUGAAUCUUCGAGCCCCCUUCACGCGUC ----....((((..(((((((((..((........))..)))))))))..........--.....-.....(((((....)))))........))))... ( -22.80, z-score = -3.47, R) >droAna3.scaffold_13266 3143090 96 + 19884421 ACCCACAGACGCAUGCCGUCCUUCUUGUUAUUGAUGUGGAAAACUUGCAUUCUGUGUGUGCGUUUUAUUUUUUCCAUUCUAGUAACCCUAGCAACG---- .......((((.....))))......(((((((..((((((((..(((((.......))))).......))))))))..)))))))..........---- ( -19.00, z-score = -1.23, R) >consensus ___GAGAAGCGUAUGCUGCGCUUCCUCUUCUCCUUGACAAAGUGCAGUGAACUUUUCC__CAUUUUCCCCACUUGAAUCUUCGAGCCCCAUUGACGCGGC ........((((.((((((((((..((........))..))))))))))......................((((......))))........))))... (-17.19 = -17.50 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:48 2011