| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,895,628 – 2,895,720 |
| Length | 92 |
| Max. P | 0.952758 |
| Location | 2,895,628 – 2,895,720 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 68.04 |
| Shannon entropy | 0.67806 |
| G+C content | 0.55607 |
| Mean single sequence MFE | -29.04 |
| Consensus MFE | -14.47 |
| Energy contribution | -13.07 |
| Covariance contribution | -1.40 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.952758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2895628 92 + 21146708 UCUUGAGGAAACCUUCGGCUGCUGCGGUGAUACGAGCUAUACCAACUACAACAACAU---CGGCCUUUCGGUUCCCGGAACCUGCUGCGGCUACC ....((((....))))((..((((((((....(((.....................)---)).......(((((...))))).))))))))..)) ( -23.10, z-score = -0.03, R) >droEre2.scaffold_4929 6969828 92 - 26641161 GCUGGAGGAAACCUUCGGCUGCUGCGGCGAAACCGGCUAUACCAACUACAACAACGU---CGGCCUAUCGGUUCCCGGCACCUGCUGCGGCUACC ((((((((...)))))))).(((((((((.....((.....))............((---(((((....))...)))))...))))))))).... ( -34.60, z-score = -2.00, R) >droYak2.chr2L 15610551 92 + 22324452 GCUGGAGGAAACCUUCGGCUGCUGCGGCGAUACCGGCUACACCAACUACAACAACAU---CGGUCUUUCGGUUCCCGGAACCUGCUGCGGCUACC ((((((((...)))))))).((((((((((.(((((....................)---))))...))(((((...))))).)))))))).... ( -33.95, z-score = -2.74, R) >droSec1.super_1 561353 92 + 14215200 GCUGGAGGAAACCUUCGGCUGCUGCGGCGAUACCGGCUAUACCAACUACAACUACAU---CGGCCUUUCGGUUCCCGGAACCUGCUGCGGCUACC ((((((((...)))))))).(((((((((.....((((...................---.))))....(((((...)))))))))))))).... ( -34.15, z-score = -2.75, R) >droSim1.chr2R 1696216 92 + 19596830 GCUGGAGGAAACCUUCGGCUGCUGCGGCGAUACCGGCUAUACCAACUACAACAACAU---CGGCCUUUCGGUUCCCGGAACCUGCUGCGGCUACC ((((((((...)))))))).(((((((((.....((((...................---.))))....(((((...)))))))))))))).... ( -34.15, z-score = -2.70, R) >dp4.chr3 1171481 86 + 19779522 GCUGGAGGUGACCUUCAACUGUUGUGGUAACACUGGCUAUGACAAUUAC---------GGUAACCGGACGGUGCCCGGCACCUGCUGCGGCUUCG ((((..(((.(((...((.(((..((((.......))))..))).))..---------))).)))...))))(((((((....)))).))).... ( -29.20, z-score = -0.79, R) >droPer1.super_2 1339441 86 + 9036312 GCUGGAGGUGACCUUCAACUGUUGUGGUAACACUGGCUAUGCCAAUUAC---------GGUAACCAGACGGUGCCCGGCACCUGCUGCGGCUUCG ((.(.(((((.((....((((((.((((.((..((((...)))).....---------.)).))))))))))....))))))).).))....... ( -29.70, z-score = -0.69, R) >droWil1.scaffold_180700 2424530 86 + 6630534 ACUUGAAUUGGCCUUCAACUGUUGCGGUGAUAACAGCUAUCAUGACUAUGG---------AACUCAAACUAUUCCCGGAACUUGUUGUGGCAAUA ..........(((..((((.(((.((((((((.....))))))......((---------((.........)))))).)))..)))).))).... ( -19.60, z-score = -1.17, R) >droVir3.scaffold_10324 1035404 83 + 1288806 AUUGGAGCUAACUUUCGACUGCUGCGGCAACCAGGGCUUCGAGGACUAU------------AACGGUAAUGUGCCCGGCACCUGUUGCGGCUACU .((((((.....))))))..(((((((((.((.((((..((...(((..------------...)))..)).))))))....))))))))).... ( -23.50, z-score = 0.39, R) >droMoj3.scaffold_6496 21866170 92 - 26866924 AUUGGAGCUCACAUUCAGCUGCUGUGGCAACACAAGCUACAAUAACUACCUCAACA---GCAAUCAACAGGUGCCCGGCAGCUGCUGCGGCUAUC .....(((.(.((..(((((((((.(((.......(((.................)---)).(((....))))))))))))))).)).))))... ( -27.03, z-score = -0.72, R) >droGri2.scaffold_15245 9125307 95 + 18325388 AUUGGAGCUCACUUUCAACUGCUGCGGCAACGAAGGCUACGCUAACUAUUUCGAUGUUGGCAAUGGUGUUGUGCCCGGCACCUGCUGCGGUUACA .((((((.....))))))..(((((((((...........((((((.........))))))...(((((((....)))))))))))))))).... ( -31.10, z-score = -0.86, R) >droAna3.scaffold_13266 3139154 92 + 19884421 GUUGGAGGACGCCUUCAGUUGCUGCGGCAAUACUGGAUAUUCAAACUAUGGCUCUGU---GGGUCUAGCAGUACCCGGAACAUGCUGCGGAUACU ..((((((...))))))((..((((((((...((((.((((....(((.((((....---.))))))).)))).))))....))))))))..)). ( -28.40, z-score = -0.55, R) >consensus GCUGGAGGAAACCUUCAGCUGCUGCGGCAAUACCGGCUAUACCAACUACAACAACAU___CAGCCUUUCGGUUCCCGGAACCUGCUGCGGCUACC .((((((.....))))))..(((((((((.....((.........)).......................((((...)))).))))))))).... (-14.47 = -13.07 + -1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:47 2011