| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,891,382 – 2,891,444 |
| Length | 62 |
| Max. P | 0.723471 |
| Location | 2,891,382 – 2,891,444 |
|---|---|
| Length | 62 |
| Sequences | 7 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 75.02 |
| Shannon entropy | 0.47445 |
| G+C content | 0.42525 |
| Mean single sequence MFE | -12.67 |
| Consensus MFE | -6.70 |
| Energy contribution | -6.89 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.723471 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2891382 62 - 21146708 UUCGCCAAGCAACAGGCGAAAACGAAUCCCACAAACUGAAA-GCAAACAGAGUAUGGUAUAUU------ ((((((........))))))........(((.(..(((...-.....)))..).)))......------ ( -12.00, z-score = -2.16, R) >droYak2.chr2L 15606489 60 - 22324452 UUCGCCAGGCAACAGGCGAAAACGAAUCCCACAAACUGAAA-GAGAAGUGAAUGGUGUAUA-------- ((((((.(....).)))))).....(..(((...(((....-....)))...)))..)...-------- ( -15.10, z-score = -2.35, R) >droSim1.chr2R 1691994 62 - 19596830 UUCGCCAAGCAACAGGCGAAAACGAAUCCCACGAACUGAAA-GCAAAAAGGGUGUGGUAUAUA------ ((((((........))))))........(((((..((....-......))..)))))......------ ( -16.60, z-score = -2.39, R) >droSec1.super_1 557145 62 - 14215200 UUCGCCAAGCAACAGGCGAAAACGAAUCCCACGAACUGAAA-GCAAAAAGGGUGUGGUAUAUA------ ((((((........))))))........(((((..((....-......))..)))))......------ ( -16.60, z-score = -2.39, R) >droMoj3.scaffold_6496 21876422 62 + 26866924 UUUGCCAAGCAACAAGCGAAGAUGAAGCCAACCAGCUGUAAUGAAAAUAAGAAAUCAUUUAU------- ........((.....))..(((((((((......)))...((....))......))))))..------- ( -5.70, z-score = 0.17, R) >droEre2.scaffold_4929 6965980 61 + 26641161 UUCGCCAAGCAACAGGCGAAAACGAAUCCCACGAACUGAAA-GAAAAUAGAGUAUGUUAUAU------- ((((((........))))))..........(((.(((....-........))).))).....------- ( -8.70, z-score = -1.35, R) >droGri2.scaffold_15245 9117752 68 - 18325388 UUCGCCAAACAGCAGGCAAACACAAAGCCGACAAACUGCAA-AAGAAUUUUGUGUGUUAGCUGCGACCU .((((.....(((.(((.........)))((((....((((-(.....))))).)))).)))))))... ( -14.00, z-score = -0.10, R) >consensus UUCGCCAAGCAACAGGCGAAAACGAAUCCCACAAACUGAAA_GAAAAUAGAGUGUGGUAUAU_______ ((((((........))))))................................................. ( -6.70 = -6.89 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:46 2011