| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,248,873 – 2,248,935 |
| Length | 62 |
| Max. P | 0.980170 |
| Location | 2,248,873 – 2,248,935 |
|---|---|
| Length | 62 |
| Sequences | 6 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 70.14 |
| Shannon entropy | 0.51860 |
| G+C content | 0.39034 |
| Mean single sequence MFE | -14.37 |
| Consensus MFE | -8.03 |
| Energy contribution | -9.57 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.04 |
| SVM RNA-class probability | 0.980170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2248873 62 + 23011544 UUUUUUAGCACUGUUUGGGAUUCUGUGAGCGGAGUAAACAAACGAGGUAGCUAAAAAAAAGG------------ (((((((((((((((((..((((((....))))))...)))))..))).)))))))))....------------ ( -20.70, z-score = -4.64, R) >droAna3.scaffold_13340 18806099 74 - 23697760 UUUUUUUGUGCUCUAUUUUGUUCUGUAUUUUAAUUAAACGAAUGAAUGCAACGAAUUCUGCCCAUCAUAAUAGG ......((.((.....(((((..(((((((.............))))))))))))....)).)).......... ( -8.02, z-score = 0.18, R) >droEre2.scaffold_4929 2284127 59 + 26641161 UUUUGUAGCACUGUACGGCAUUCUGUGAGCGGAGUAAACAAACGAGUUGGCUGAAAAGG--------------- ..........((...((((((((((....)))))).(((......))).))))...)).--------------- ( -11.00, z-score = 0.45, R) >droYak2.chr2L 2222156 60 + 22324452 UUUUUCAGCACUGUAUGGGAUUCUGUGAACGGAGUAAACAAAUGAGUUGGCUAAAAAAGG-------------- (((((.((((((((.((..((((((....))))))...)).)).)))..))).)))))..-------------- ( -12.60, z-score = -1.58, R) >droSec1.super_5 423557 60 + 5866729 UUUUUUAGCACUGUGUGGGAUUCUGUGAGCGGAGUAAACAAACGAGGUAGCUAAAAAAGG-------------- ((((((((((((.(((...((((((....))))))..))).....))).)))))))))..-------------- ( -18.30, z-score = -3.56, R) >droSim1.chr2L 2206450 60 + 22036055 UUUUUUAGCACUGUGUGGGAUUCUGUGAGCGGAGUAAACAAACGAGAUAGCUAAAAAAGG-------------- (((((((((.((((.((..((((((....))))))...)).)).))...)))))))))..-------------- ( -15.60, z-score = -2.66, R) >consensus UUUUUUAGCACUGUAUGGGAUUCUGUGAGCGGAGUAAACAAACGAGUUAGCUAAAAAAGG______________ (((((((((.((((.((..((((((....))))))...)).)).))...)))))))))................ ( -8.03 = -9.57 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:36 2011