| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,871,296 – 2,871,389 |
| Length | 93 |
| Max. P | 0.703909 |
| Location | 2,871,296 – 2,871,389 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 79.39 |
| Shannon entropy | 0.34471 |
| G+C content | 0.47691 |
| Mean single sequence MFE | -26.34 |
| Consensus MFE | -15.94 |
| Energy contribution | -16.05 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.703909 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2871296 93 - 21146708 UCACUUUGGACUUUAAUUGGUCCUUUGUGACUGCA-UUUGUCGACGCUUUCGCUCGGCGU---CUUCGACGCAAUUUGACUGCUGUC---CUUGAGGCUG----- ((((...(((((......)))))...)))).....-...(((((.((....)))))))((---(((.((((((.......))).)))---...)))))..----- ( -28.30, z-score = -2.65, R) >droPer1.super_2 1324036 105 - 9036312 UCGCUUUAGAAUUUAAUUGGUCCUUUGUGUCUGCAUUUUGUCGACGCGUUCGCUUGGAGUUUGCUUCGACACAAUUUGACUGUCGCUUGGCUUGUGGCAUCAACC ........((........((((..(((((((.(((..((.((((.((....))))))))..)))...)))))))...))))(((((.......))))).)).... ( -26.00, z-score = -0.33, R) >dp4.chr3 1156688 105 - 19779522 UCGCUUUAGAAUUUAAUUGGUCCUUUGUGUCUGCAUUUUGUCGACGCGUUCGCUUGGAGUUUGCUUCGACACAAUUUGACUGUCGCUUGGCUUGUGGCAUCAACC ........((........((((..(((((((.(((..((.((((.((....))))))))..)))...)))))))...))))(((((.......))))).)).... ( -26.00, z-score = -0.33, R) >droYak2.chr2L 15595008 93 - 22324452 UCACUUUGGACUUUAAUUGGUCCUUUGUGACUGCA-UUUGUCGACGCUUUCGCUCGGCGU---CUUCGACACAAUUUGACUGCUGUU---CCUGCGGCUG----- ((((...(((((......)))))...)))).....-..((((((((((.......)))))---)...))))..........(((((.---...)))))..----- ( -27.70, z-score = -2.97, R) >droSec1.super_1 545220 79 - 14215200 UCACUUUGGACUUUAAUUGGUCCUUUGUGACUGCA-UUUGUCGACGCUUUCGCUCGGCGU---CUUCGACGCAAUUUGACUGC---------------------- ((((...(((((......)))))...)))).(((.-...(((((.((....)))))))((---(...))))))..........---------------------- ( -23.70, z-score = -2.90, R) >consensus UCACUUUGGACUUUAAUUGGUCCUUUGUGACUGCA_UUUGUCGACGCUUUCGCUCGGCGU___CUUCGACACAAUUUGACUGCCGCU___CUUGUGGCAG_____ ..................((((..(((((.........((((((.((....))))))))..........)))))...))))(((((.......)))))....... (-15.94 = -16.05 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:38 2011