| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,840,154 – 2,840,236 |
| Length | 82 |
| Max. P | 0.950807 |
| Location | 2,840,154 – 2,840,236 |
|---|---|
| Length | 82 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 53.17 |
| Shannon entropy | 0.74486 |
| G+C content | 0.47882 |
| Mean single sequence MFE | -21.18 |
| Consensus MFE | -10.60 |
| Energy contribution | -10.47 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.64 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.950807 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2840154 82 + 21146708 ----------AGAACCACAGCAUGUUGGUUGUCAUAUCAAGGUGAGGUAUGCGGCAGCGAGUGCCG-AGAACCCUGAUGCAAGUGGAACUUGC ----------....((((.((((...((((.(((((((.......)))))..((((.....)))))-).))))...))))..))))....... ( -24.10, z-score = -0.58, R) >droSim1.chrU 5263221 79 + 15797150 ---------AGAACCCUAGGAAUGCUUAUCAUAUUGAUUAGGUGAGCUGUGCGGCUACGAGAGCCGUAGUAGUAGAGCGA-AAAGUAGC---- ---------.............(((((.((.((((.....)))).(((.(((.((((((.....)))))).))).)))))-.)))))..---- ( -20.50, z-score = -1.20, R) >droEre2.scaffold_4845 21677310 90 - 22589142 CGAUCCACAAGAACAUCCGGAAUGUUCCUCUUAUGUACUAGGUGAGCUAUGUGGCUACGAGAGCCGCAUUAGCCAAGUGA-AAACUACAAC-- .....(((.((.((((..(((....)))....)))).))..))).(((((((((((.....))))))).))))..(((..-..))).....-- ( -23.40, z-score = -1.74, R) >droYak2.chr2h_random 945541 68 + 3774259 ---------------------AUGCUGUUUAUCGUUACUAGGUGAGCUAUGCGGCUACGAGAGUCGUAGAUACACUGCGAGAAACUAAC---- ---------------------.....((((.((((.....((((.....(((((((.....)))))))....)))))))).))))....---- ( -16.70, z-score = -0.31, R) >consensus __________GAACCC_CGGAAUGCUGAUCAUAUUUACUAGGUGAGCUAUGCGGCUACGAGAGCCGUAGAAGCAAAGCGA_AAACUAAC____ .............................................(((((((((((.....))))))).)))).................... (-10.60 = -10.47 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:37 2011