| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,246,574 – 2,246,675 |
| Length | 101 |
| Max. P | 0.664544 |
| Location | 2,246,574 – 2,246,675 |
|---|---|
| Length | 101 |
| Sequences | 8 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 68.94 |
| Shannon entropy | 0.57737 |
| G+C content | 0.38314 |
| Mean single sequence MFE | -25.11 |
| Consensus MFE | -7.94 |
| Energy contribution | -8.17 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.664544 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2246574 101 + 23011544 UUGUGUGUGAAUCCCCGAGGGCACAAUAUUUGCCCCUGAAUUUGAUUAUUUAAAUUUG--CACAUUCGUUUUCAUGGCGCAUAAAUUAUUUAUGAGCCCAGUG--------- ..((((((..........(((((.......)))))..((((((((....)))))))))--)))))..........(((.(((((.....))))).))).....--------- ( -24.30, z-score = -1.61, R) >droSim1.chr2L 2204218 103 + 22036055 UUGUGUGUGAAUCCCCGAGGGCGCAAUAUUUGCCCCUGAAUUUGAUUAUUUAAAUUUGCGCACAUUCGUUUUCAUGGCGCAUAAAUUAUUUAUGAGCCCAGUG--------- .(((((((.........((((.(((.....)))))))((((((((....)))))))))))))))...........(((.(((((.....))))).))).....--------- ( -28.90, z-score = -2.39, R) >droSec1.super_5 421327 103 + 5866729 UUGUGUGUGAAUCCCCGAGGGCGCAAUAUUUGCCCCUGAAUUUGAUUAUUUAAAUUUGCGCACAUUCGUUUUCAUGGCGCAUAAAUUAUUUAUGAGCCCAGUG--------- .(((((((.........((((.(((.....)))))))((((((((....)))))))))))))))...........(((.(((((.....))))).))).....--------- ( -28.90, z-score = -2.39, R) >droYak2.chr2L 2219890 101 + 22324452 UUGUGUGCGAAUACCCGAGGGCACAAUAUUUGCCCCUGAAUUUGAUUAUUUAAAUUUG--CACAUUCGUUUUCAUGGCGCAUACAUUAUGUAUGAGCCCAGUG--------- ..((((((((((......(((((.......))))).(((((......))))).)))))--)))))..........(((.(((((.....))))).))).....--------- ( -29.60, z-score = -2.81, R) >droEre2.scaffold_4929 2281831 101 + 26641161 UUGUGUGCGAAUCCCCGAGGGCACAAUAUUUGCUCCUGAAUUUGAUUAUUUAAAUUUG--CACAUUCGUUUUCAUGGCGCAUAAAUUAUUUAUGAGCCCAGUG--------- ..((((((.........((((((.......))).)))((((((((....)))))))))--)))))..........(((.(((((.....))))).))).....--------- ( -24.40, z-score = -1.43, R) >droAna3.scaffold_12916 9958867 101 - 16180835 ------UUGUGAAAGAGGAGGGAAAACCCUCACA---GAAUUUGAUUAUUUAAAUUCU--CACAUUCGUUUUCGUGGCCUAUAAAUUAUUUAUGAGCCAUGGGGCGGGAGUG ------.(((((.....(((((....)))))...---((((((((....)))))))))--))))((((.(..((((((.(((((.....))))).))))))..))))).... ( -35.30, z-score = -4.29, R) >droVir3.scaffold_12963 13681626 77 + 20206255 --------------UUGUGUGUCCAGGUUCCAGG---AUAUUUGAUUAUUUAAAUU---------UGAUGCCAAUUGCGUAUAAAUAAUUUAUGAGGCGUGCG--------- --------------..(..((((..(((..(((.---..((((((....)))))))---------))..))).....((((.........)))).))))..).--------- ( -13.00, z-score = 0.30, R) >droGri2.scaffold_15126 2211811 77 - 8399593 --------------UUGUGUGUCCAAGUUGCAUA---GAGUUUGAUUAUUUAAAUU---------UCAUGUUCAUUGCGUAUAAAUAAUUUAUGAGGCGUGCG--------- --------------..(..(((((((...((((.---.(((((((....)))))))---------..))))...)))((((.........)))).))))..).--------- ( -16.50, z-score = -1.45, R) >consensus UUGUGUGUGAAUCCCCGAGGGCACAAUAUUUGCCCCUGAAUUUGAUUAUUUAAAUUUG__CACAUUCGUUUUCAUGGCGCAUAAAUUAUUUAUGAGCCCAGUG_________ .....................................((((((((....))))))))..................(((.(((((.....))))).))).............. ( -7.94 = -8.17 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:35 2011