| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,809,538 – 2,809,626 |
| Length | 88 |
| Max. P | 0.621914 |
| Location | 2,809,538 – 2,809,626 |
|---|---|
| Length | 88 |
| Sequences | 6 |
| Columns | 88 |
| Reading direction | reverse |
| Mean pairwise identity | 68.10 |
| Shannon entropy | 0.57076 |
| G+C content | 0.34123 |
| Mean single sequence MFE | -13.52 |
| Consensus MFE | -6.30 |
| Energy contribution | -6.83 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.621914 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2809538 88 - 21146708 GUACUGUAAGCGGUUUAUAAUGCCGCACAUAAGUAUGCAUGUAUAACUACAAUCCUCCAUGGACGAAUACAAUACUCAAUACUAUUUU .........(((((.......))))).....(((((....((((........(((.....)))........))))...)))))..... ( -16.29, z-score = -1.17, R) >droEre2.scaffold_4929 6901082 69 + 26641161 GUACUGUAAGCGGUCAAUAAUGCCGCACA------------UUUAACUACAAUCCUCCAUGGACGAAUACAAUACUAUUUU------- (((.((((.(((((.......)))))...------------...........(((.....)))....)))).)))......------- ( -14.60, z-score = -2.97, R) >droYak2.chr2L 15543059 73 - 22324452 GUACUGUAAGCGGUUUAUAAUGCCGCACAU--------AUGUAUAACUACAAUCCUCCAUGGACGAAUACAAUACUAUUUU------- (((.((((.(((((.......)))))....--------.((((....)))).(((.....)))....)))).)))......------- ( -15.90, z-score = -2.33, R) >droSec1.super_1 491512 88 - 14215200 GUUCUGUAAGCAGUUUAUAAUGCCGCACAUAAGUAUGCAUGUAUAACUACAAUCCUCCUUGGACGAAUACAAUACUCAAUUCGAUUUU ((..((((..(((((....((((.((......))..))))....))))....(((.....))).)..))))..))............. ( -12.30, z-score = -0.14, R) >droSim1.chr2R 1622982 88 - 19596830 GUUCUGUAAGCGGUUUAUAAUGCCGCACAUAAGUAUGCAUGUAUAACUACAAUCCUCCAUGGACGAAUACAAUACUCAAUACUAUUUU .........(((((.......))))).....(((((....((((........(((.....)))........))))...)))))..... ( -16.29, z-score = -1.32, R) >droVir3.scaffold_12823 814702 66 + 2474545 -CUCUUGCACAGAUUUGUUGCAAUUAAC---------UACAUUUAAUAACAA---UGUAUAAAC-AAUUUAGUAGUACUU-------- -...((((((......).)))))...((---------(((............---.........-......)))))....-------- ( -5.73, z-score = 0.85, R) >consensus GUACUGUAAGCGGUUUAUAAUGCCGCACAU_______CAUGUAUAACUACAAUCCUCCAUGGACGAAUACAAUACUAAAUU_______ ....((((.(((((.......)))))..........................(((.....)))....))))................. ( -6.30 = -6.83 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:24 2011