| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,806,400 – 2,806,499 |
| Length | 99 |
| Max. P | 0.822725 |
| Location | 2,806,400 – 2,806,499 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 80.56 |
| Shannon entropy | 0.25972 |
| G+C content | 0.59017 |
| Mean single sequence MFE | -30.68 |
| Consensus MFE | -22.84 |
| Energy contribution | -22.18 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.822725 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2806400 99 + 21146708 ACUUGGUUCUGGCCUGGCAUUCUGUGGCAUUCCCUUUGUAUUUGUCUUGCGGCUCCACAGCCCCACUGCCGCACAGCCCCUUGCUCCGUCAGCUGCCAA ...((((.(((((..((((..((((((((.............))))..(((((..............))))))))).....))))..)))))..)))). ( -29.76, z-score = -0.79, R) >droYak2.chr2L 15539855 90 + 22324452 ACUUGGUUCUGGCCUGGC----UGUGGCAUUCCCUUUGUAUUUGUAUUGG-----GUCUCUCCCCUUGCCGCACAGCCCCUUGCCACGCCAGUUGCCAA .........(((((((((----.((((((....((.(((....(((..((-----(.....)))..))).))).)).....)))))))))))..)))). ( -32.10, z-score = -2.64, R) >droEre2.scaffold_4929 6897923 89 - 26641161 ACUUGGCUCUGGCCUGGC----UGUGGCAUUCCCUCUGUAUUUGUCUUGC-----CACUGCCACACUGCCGCACUGCCC-UUGCCCCGCCAGUUGCCCA ....(((.(((((.((((----.((((((..................)))-----))).)))).......(((......-.)))...)))))..))).. ( -30.17, z-score = -2.38, R) >consensus ACUUGGUUCUGGCCUGGC____UGUGGCAUUCCCUUUGUAUUUGUCUUGC_____CACUGCCCCACUGCCGCACAGCCCCUUGCCCCGCCAGUUGCCAA ....(((.(((((..(((....(((((((.....................................))))))).........)))..)))))..))).. (-22.84 = -22.18 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:23 2011