| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,806,200 – 2,806,277 |
| Length | 77 |
| Max. P | 0.617665 |
| Location | 2,806,200 – 2,806,277 |
|---|---|
| Length | 77 |
| Sequences | 7 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 85.41 |
| Shannon entropy | 0.28640 |
| G+C content | 0.54104 |
| Mean single sequence MFE | -27.39 |
| Consensus MFE | -18.23 |
| Energy contribution | -19.79 |
| Covariance contribution | 1.55 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.617665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2806200 77 - 21146708 GGGUGUCGGCGGUGUCGAGUGCAAACAAAAUGGCCGCCGACGCCAUUG----UUGUCAAAAAAAG-GCGUCAAGCGCGUCAA .((((((((((((.....((....))......))))))))))))....----............(-((((.....))))).. ( -30.30, z-score = -2.42, R) >droSim1.chr2R 1619619 77 - 19596830 GGGUGUCGGCGGUGUCGAGUGCAAACAAAAUGGCCGCCGACGCCAUUG----UUGUCAAAAAAAG-GCGUCAAGCGCGUCAA .((((((((((((.....((....))......))))))))))))....----............(-((((.....))))).. ( -30.30, z-score = -2.42, R) >droSec1.super_1 488214 77 - 14215200 GGGUGUCGGCGGUGUCGAGUGCAAACAAAAUGGCCGCCGACGCCAUUG----UUGUCAAAAAAAG-GCGUCAAGCGCGUCAA .((((((((((((.....((....))......))))))))))))....----............(-((((.....))))).. ( -30.30, z-score = -2.42, R) >droYak2.chr2L 15539670 77 - 22324452 GGGUGCCGGCGGUGUCAAGUGCAAACAAAAUGGCCGCCGACGCCAUUG----UUGUCAAAAAAAG-GCGUCAAGCUCGUCAA ((((...((((((.....((....))......))))))((((((.((.----((....)).)).)-)))))..))))..... ( -25.30, z-score = -1.04, R) >droEre2.scaffold_4929 6897728 77 + 26641161 GGGUGUCGGCGGCGUCAAGUGCAAACAAAAUGGCCGCCGACGCCAUUG----UUGUCAAAAAAAG-GCGUCAAGCGCGUCAA .((((((((((((.....((....))......))))))))))))....----............(-((((.....))))).. ( -31.90, z-score = -3.06, R) >droAna3.scaffold_13266 9132690 73 - 19884421 ---GGGCGGCAGUGUCAAGUGCAAACAAAAUGGCGCCCAACGCCAUUG----UUGUCAAAAAAAG-GCGCCAA-CACGGUAA ---.(((((((.(....).)))..(((((((((((.....))))))).----)))).........-.))))..-........ ( -22.00, z-score = -0.54, R) >droGri2.scaffold_15245 16368659 80 - 18325388 --GUGUGUGCAGUGUCAACUGCAAACAAAAUGGCUGACGACGCAAUUGUUACUUGCCACAAAGAGCGCGAGAAAUGCCCCAA --.(((.((((((....)))))).)))....(((((((((.....))))))((((((.......).)))))....))).... ( -21.60, z-score = -0.67, R) >consensus GGGUGUCGGCGGUGUCAAGUGCAAACAAAAUGGCCGCCGACGCCAUUG____UUGUCAAAAAAAG_GCGUCAAGCGCGUCAA .((((((((((((......((....)).....))))))))))))......................(((.....)))..... (-18.23 = -19.79 + 1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:22 2011