| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,799,309 – 2,799,419 |
| Length | 110 |
| Max. P | 0.527335 |
| Location | 2,799,309 – 2,799,419 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.50 |
| Shannon entropy | 0.26668 |
| G+C content | 0.40846 |
| Mean single sequence MFE | -25.58 |
| Consensus MFE | -18.30 |
| Energy contribution | -19.42 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2799309 110 - 21146708 ------AACUUUCUGUGGUUUAUUCAUUUAACACAAUGUCGGUUUGCUGCUCGGCUCUGACGAGCUCUAAAGUUUUCACCCAUUGUGUUUCAG-AGGAAACACAAAUCACCACUACU--- ------........(((((....((....(((((((((..(((..(((....(((((....)))))....)))....))))))))))))...)-)(....).......)))))....--- ( -28.60, z-score = -2.58, R) >droEre2.scaffold_4929 6890608 99 + 26641161 ------AACUUUCUGUGGUUUAUUCAUUUAACUCAAUGUCGGUUUGCUGCUCGGGUCUG------------GUUUUCACCCAUUGUGUUUGAGCAGGCAACACAAAUCACCACAACU--- ------.......((((((.....((((......))))..((((((.((.....(((((------------.((..(((.....)))...)).)))))..))))))))))))))...--- ( -22.20, z-score = -0.62, R) >droYak2.chr2L 15533676 117 - 22324452 AACAUUCACAUUCUGUGGUUUAUUCAUUUAACUCAAUGUCGGUUUGCUGCUCGGCUCUGACAAGCUCUAGAGUUUUCACCCAUUGUGUAUCAAAAGGAAGCAUAAAUCACCACAACU--- .............((((((..........(((((..((((((...(((....))).)))))).......)))))........((((((.((.....)).))))))...))))))...--- ( -24.40, z-score = -1.23, R) >droSec1.super_1 481547 114 - 14215200 ------AACUUUCUGUGGUUUAUUCAUUUAACACAAUGUCGGUUUGCUGCUCGCCUCUGACGAACUCUAGAGUUUUCACCCAUUGUGUUUCGGAAGGAAACACAAAUCAUCACCACUACU ------........(((((...(((....(((((((((((((...((.....))..)))))(((((....)))))......))))))))...)))(....)..........))))).... ( -27.10, z-score = -2.00, R) >droSim1.chr2R 1612820 114 - 19596830 ------AACUUUCUGUGGUUUAUUCAUUUAACAAAAUGUCGGUUUGCUGCUCGCCUCUGACGAACUCUAGAGUUUUCACCCAUUGUGUUUCGGAAGGAAACACAAAUCAUCACCACUACU ------........(((((..................(((((...((.....))..)))))(((((....))))).......(((((((((.....)))))))))......))))).... ( -25.60, z-score = -1.56, R) >consensus ______AACUUUCUGUGGUUUAUUCAUUUAACACAAUGUCGGUUUGCUGCUCGGCUCUGACGAACUCUAGAGUUUUCACCCAUUGUGUUUCAGAAGGAAACACAAAUCACCACAACU___ ..............(((((.................((((((...(((....))).))))))....................(((((((((.....)))))))))...)))))....... (-18.30 = -19.42 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:21 2011