| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,791,766 – 2,791,869 |
| Length | 103 |
| Max. P | 0.852857 |
| Location | 2,791,766 – 2,791,869 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 70.01 |
| Shannon entropy | 0.51665 |
| G+C content | 0.47557 |
| Mean single sequence MFE | -29.40 |
| Consensus MFE | -11.78 |
| Energy contribution | -14.32 |
| Covariance contribution | 2.53 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2791766 103 + 21146708 CAAACAGUAUGUCCCACAGGGCGUAUGAAAUUCUCCCGUUGUGUGCAGCCUCUUUGCGUAAAAUAGAUGCAAAUUAAUAUGCAUUU-----CUAUGCUGCUGCUACUG ......((((((((....))))))))..............(((.(((((...(((((((.......))))))).......((((..-----..)))).)))))))).. ( -26.60, z-score = -1.67, R) >droSim1.chr2R 1605178 103 + 19596830 CAAACAGUAUGUCCCACAGGGCGUAUGAAAUUCUCCCGUUUUGUGCAGCCCCCCUGCGCAAAAUAGAUGCAAAUUAAUAUGCAUUU-----CUAUGCUGCUGCUACUG ....(((((.((((....))))(((((..........(((((((((((.....)))))))))))(((((((........)))))))-----.))))))))))...... ( -29.90, z-score = -3.03, R) >droSec1.super_1 473972 98 + 14215200 CAAACAGUAUGUCCCACAGGGCGUAUGAAAUUCUCCCGUUUUGUGCA-----UCUGCGCAAAAUAGAUGCAAAUUAAUAUGCAUUU-----CUAUGCUGCUGCUCCUG ....(((((.((((....))))(((((..........(((((((((.-----...)))))))))(((((((........)))))))-----.))))))))))...... ( -26.80, z-score = -2.41, R) >droYak2.chr2L 15525523 103 + 22324452 CAAACAGUAUGUCCCACAGGGCGUAUGAAAUGCUCUCGUUUUGUGCAGCCCCUUUUCGCAGAAUAGAUGCAAAUUAAUAUGCAUUU-----CUAUGCUGCUGCUGCUG ....(((((.........(((((((..(((((....)))))..))).))))......((((.(((((((((........))))..)-----)))).)))))))))... ( -32.70, z-score = -2.76, R) >dp4.chr3 1071584 95 + 19779522 ---AAAAAGCGUCCU----GGCCUAUUCCUGGCCCCC--UUUACGCAGGUUCUUUG----AGAGCGAUGCAAAUGAAUAUGCACUCACCACCUGUGUGGCCGGCAGCG ---.....((...((----((((.......((...))--...((((((((....((----((.(((((........)).))).))))..))))))))))))))..)). ( -30.20, z-score = -1.39, R) >droPer1.super_2 1245209 95 + 9036312 ---AAAAAGCGUCCU----GGCCUAUUCCUGGCCCCC--UUUACGCAGGUUCUUUG----AGAGCGAUGCAAAUGAAUAUGCACUCACCACCUGUGUGGCCGGCAGCG ---.....((...((----((((.......((...))--...((((((((....((----((.(((((........)).))).))))..))))))))))))))..)). ( -30.20, z-score = -1.39, R) >consensus CAAACAGUAUGUCCCACAGGGCGUAUGAAAUGCUCCCGUUUUGUGCAGCCUCUUUGCGCAAAAUAGAUGCAAAUUAAUAUGCAUUU_____CUAUGCUGCUGCUACUG ....((((((((((....))))...............(((((((((((.....))))))))))).((((((........))))))........))))))......... (-11.78 = -14.32 + 2.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:19 2011