| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,787,434 – 2,787,534 |
| Length | 100 |
| Max. P | 0.884089 |
| Location | 2,787,434 – 2,787,534 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 86.93 |
| Shannon entropy | 0.19669 |
| G+C content | 0.49141 |
| Mean single sequence MFE | -29.50 |
| Consensus MFE | -24.99 |
| Energy contribution | -25.55 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.884089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2787434 100 - 21146708 GAUCCAAUAAAUUCGAUUGCAACCGAAGCAUGAAAAGCCAGCAAGGCGAAAGCUGAAAGCUGAAAGCUGAAGGCGGUGGGAGCUACUGCAUGGCUGGCAA ...........((((..(((.......)))))))..((((((..(((....)))...(((.....)))....(((((((...)))))))...)))))).. ( -31.40, z-score = -1.26, R) >droSec1.super_1 469899 86 - 14215200 GAUUCAAUAAAUUCGAUUGCAAUCGAAGCAUGAAAAGCCAGCAAGGCGAAAGCUGAG-------AGUGGUGGG-------AGCUACUGCAUGGCUGGCAA ..((((.....((((((....))))))...))))..((((((..(((....)))...-------.(..((((.-------..))))..)...)))))).. ( -31.10, z-score = -3.14, R) >droSim1.chr2R 1600986 86 - 19596830 GAUCCAAUAAAUUCGAUUGCAACCGAAGCAUGAAAAGCCAGCAAGGCGAAAGCUGAG-------AGUGGUGGG-------AGCUACUGCAUGGCUGGCAA ...........((((..(((.......)))))))..((((((..(((....)))...-------.(..((((.-------..))))..)...)))))).. ( -27.40, z-score = -1.64, R) >droYak2.chr2L 15521540 90 - 22324452 GAUCCAAUAAAUUCGAUUGCAACCGAAGCAUGAAAAGCCAGCAAGGCGAAAGCUGAAGGC----AGUGAAAGGC------AGCUACUGCAUGGCUGGCAA ...........((((..(((.......)))))))..((((((..(((....)))....((----((((......------...))))))...)))))).. ( -28.10, z-score = -1.42, R) >consensus GAUCCAAUAAAUUCGAUUGCAACCGAAGCAUGAAAAGCCAGCAAGGCGAAAGCUGAA_______AGUGGAAGG_______AGCUACUGCAUGGCUGGCAA ...........((((..(((.......)))))))..((((((..(((....)))...........(((((((..........)))))))...)))))).. (-24.99 = -25.55 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:18 2011