| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,245,717 – 2,245,824 |
| Length | 107 |
| Max. P | 0.935836 |
| Location | 2,245,717 – 2,245,824 |
|---|---|
| Length | 107 |
| Sequences | 7 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 76.75 |
| Shannon entropy | 0.45489 |
| G+C content | 0.47087 |
| Mean single sequence MFE | -23.13 |
| Consensus MFE | -19.98 |
| Energy contribution | -19.17 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.935836 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2245717 107 + 23011544 GGUUGUUGCUAAUGCAUUUACUUGGCUUAAUUAGUUGAGAUUCUACAUUAUUCAUACGCCACGUGUGACCAGCGGCCACCCACUCGCCUGCAAAUGCCCACCCGCCC ((((((((.(((((......((..(((.....)))..))......))))).(((((((...))))))).))))))))............((....)).......... ( -24.80, z-score = -0.73, R) >droSim1.chr2L 2203358 107 + 22036055 GGUUGUUGCUAAUGCAUUUACUUGGCUUAAUUAGUUGAGAUUCUACAUUAUUCAUACGCCACGUGUGACCAGCGGCCACCCACUCGCCCGAAAAUGCCCACCCACCC ((((((((.(((((......((..(((.....)))..))......))))).(((((((...))))))).)))))))).............................. ( -24.40, z-score = -1.41, R) >droSec1.super_5 420533 107 + 5866729 GGUUGUUGCUAAUGCAUUUACUUGGCUUAAUUAGUUGGGAUUCUACAUUAUUCAUACGCCACGUGUGACCGGCGGCCACCCACUCGCCCGAAAAUGCCCACCCACCC (((.(.((.....((((((.((..(((.....)))..))..((........(((((((...)))))))..(((((........))))).)))))))).)).).))). ( -25.00, z-score = 0.10, R) >droYak2.chr2L 2219011 93 + 22324452 GGUUGUUGCUAAUGCAUUUACUUGGCUUAAUUAGUUGAGAUUCUACAUUAUUCAUACGCCACGUGUGACCAGCGGCCACCCACUCAACCACCC-------------- ((((((((.(((((......((..(((.....)))..))......))))).(((((((...))))))).))))))))................-------------- ( -24.40, z-score = -2.51, R) >droEre2.scaffold_4929 2280989 84 + 26641161 GGUUGUUGCUAAUGCAUUUACUUGGCUUAAUUAGUUGAGAUGCUACAUUAUUCAUACGCCACGUGUGACCAGCGGCCACCCAAU----------------------- (((.((((((...((((...((..(((.....)))..))))))........(((((((...)))))))..)))))).)))....----------------------- ( -25.90, z-score = -2.57, R) >dp4.chr4_group3 7505154 103 - 11692001 GUUUGUUGUUAAUACAUUUACUCGGCUUAAUUAGUUGAGAUUUUGCAUUAUUCACA-GCCACGUGUGACCACCAAGUG--GGCUUAACCUUUGUCCUUC-CCCCCCG .......(((((........(((((((.....))))))).....((.....(((((-......)))))((((...)))--))))))))...........-....... ( -18.70, z-score = -0.58, R) >droPer1.super_1 4613464 104 - 10282868 GUUUGUUGUUAAUACAUUUACUCGGCUUAAUUAGUUGAGAUUUUGCAUUAUUCACA-GCCACGUGUGACCACCAAGUG--GGCUUAACCUUUGUCCUCCACCCCCCG .......(((((........(((((((.....))))))).....((.....(((((-......)))))((((...)))--))))))))................... ( -18.70, z-score = -0.35, R) >consensus GGUUGUUGCUAAUGCAUUUACUUGGCUUAAUUAGUUGAGAUUCUACAUUAUUCAUACGCCACGUGUGACCAGCGGCCACCCACUCAACCGAAAAUGCCCACCC_CCC ((((((((.(((((......(((((((.....)))))))......))))).(((((((...))))))).)))))))).............................. (-19.98 = -19.17 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:34 2011