| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,772,417 – 2,772,469 |
| Length | 52 |
| Max. P | 0.980495 |
| Location | 2,772,417 – 2,772,469 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 90.97 |
| Shannon entropy | 0.12362 |
| G+C content | 0.56511 |
| Mean single sequence MFE | -18.63 |
| Consensus MFE | -17.58 |
| Energy contribution | -17.13 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.05 |
| SVM RNA-class probability | 0.980495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2772417 52 + 21146708 AGGAUCAAUGUGGACAGCAGUCCACGUUGUGACGGAAGGGUAACGCAGCGAA ....((...((((((....))))))((((((.(....).....)))))))). ( -18.00, z-score = -2.67, R) >droSim1.chr2R 1585589 51 + 19596830 CGGAUCACUGUGGACGGCAGUCCACGUAGUGACG-AAGGGUAACGCUGCGAA ....((...((((((....))))))((((((.(.-...)....)))))))). ( -18.70, z-score = -1.89, R) >droSec1.super_1 454230 51 + 14215200 CGGAUCACUGUGGACGGUAGUCCACGUAGUGACG-AAGGGUAACGCUGCGAA .((((.((((....)))).)))).(((((((.(.-...)....))))))).. ( -19.20, z-score = -2.31, R) >consensus CGGAUCACUGUGGACGGCAGUCCACGUAGUGACG_AAGGGUAACGCUGCGAA ....((...((((((....))))))((((((((......))..)))))))). (-17.58 = -17.13 + -0.44)
| Location | 2,772,417 – 2,772,469 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 90.97 |
| Shannon entropy | 0.12362 |
| G+C content | 0.56511 |
| Mean single sequence MFE | -13.90 |
| Consensus MFE | -12.90 |
| Energy contribution | -13.57 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.961896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2772417 52 - 21146708 UUCGCUGCGUUACCCUUCCGUCACAACGUGGACUGCUGUCCACAUUGAUCCU .......................(((.((((((....)))))).)))..... ( -12.10, z-score = -1.80, R) >droSim1.chr2R 1585589 51 - 19596830 UUCGCAGCGUUACCCUU-CGUCACUACGUGGACUGCCGUCCACAGUGAUCCG .................-.((((((..((((((....))))))))))))... ( -14.80, z-score = -1.97, R) >droSec1.super_1 454230 51 - 14215200 UUCGCAGCGUUACCCUU-CGUCACUACGUGGACUACCGUCCACAGUGAUCCG .................-.((((((..((((((....))))))))))))... ( -14.80, z-score = -2.50, R) >consensus UUCGCAGCGUUACCCUU_CGUCACUACGUGGACUGCCGUCCACAGUGAUCCG ...................((((((..((((((....))))))))))))... (-12.90 = -13.57 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:17 2011