| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,722,162 – 2,722,254 |
| Length | 92 |
| Max. P | 0.500000 |
| Location | 2,722,162 – 2,722,254 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 75.29 |
| Shannon entropy | 0.46533 |
| G+C content | 0.60468 |
| Mean single sequence MFE | -39.30 |
| Consensus MFE | -23.18 |
| Energy contribution | -22.38 |
| Covariance contribution | -0.79 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 2722162 92 - 21146708 GUUGCUCGUCAUCAACGCCCUGGCCGAGCUGUUACU------AGAUGGAGUUGGCCAUUGUGUGGC---AGCUGCCCUGGGCUGCUUUGUAGGCGGCUCUG ((((((...((.....((((.(((..(((((((((.------.(((((......)))))..)))))---)))))))..)))).....))..)))))).... ( -38.20, z-score = -1.31, R) >droEre2.scaffold_4929 6815684 92 + 26641161 GUUGCUCGCCAUCAACGCCCUGGCCGAGCUGCUGCC------AGCAGGAGCUGGCCAUUGUGUGGC---AGCUGCCUUGGGCUGCUUGGUGGGCGGCUCCG (((((((((((...((((..(((((.((((.(((..------..))).)))))))))..))))(((---((((......)))))))))))))))))).... ( -52.30, z-score = -2.44, R) >droYak2.chr2L 15456725 98 - 22324452 CAUGCCCGUCAUCAACGCCCUGGCCGAGUUGCUGCCAGUUGGAGCUGGAGUUGGCCAUUGUGUGGC---AGCUGCCUUGGGCUGCUUUGUGGGCGGCUCUG ..((((((.((...((((..((((((....(((.(((((....))))))))))))))..))))(((---((((......))))))).))))))))...... ( -41.70, z-score = -0.24, R) >droSec1.super_1 400586 92 - 14215200 GUUGCUCGUCAUCAACGCCCUGGCCGAGCUGCUGCU------AGUUGGAGUUGGCCAUUGUGUGGC---AGCUGCCUUGGGCUGCUUUGUAGGCGGCUCUG ((((((...((.....((((.(((..((((((..(.------...(((......)))....)..))---)))))))..)))).....))..)))))).... ( -37.80, z-score = -0.60, R) >droSim1.chr2R 1534848 92 - 19596830 GUUGCUCGUCAUCAACGCCCUGGCCGAGCUGCUGCU------AGUUGGAGUUGGCCAUUGUGUGGC---AGCUGCCCUGGGCUGCUUUGUAGGCGGCUCUG ((((((...((.....((((.(((..((((((..(.------...(((......)))....)..))---)))))))..)))).....))..)))))).... ( -37.70, z-score = -0.38, R) >droWil1.scaffold_180745 2791032 97 + 2843958 ----AGAGUUGUCGCCCUUUCGUUGGAUCUUGUUGUAAAUAAAGUUGGCAUUGUCGAUGAUGUUGCUGGGGUUACUGGUGGCCCCUUUGUUGGCGGUUCUG ----((((..(((((....(((((((....(((((..........)))))...)))))))....)).(((((((....)))))))......)))..)))). ( -28.10, z-score = -1.54, R) >consensus GUUGCUCGUCAUCAACGCCCUGGCCGAGCUGCUGCU______AGUUGGAGUUGGCCAUUGUGUGGC___AGCUGCCUUGGGCUGCUUUGUAGGCGGCUCUG ...((((((((.........)))).)))).................((((((.(((((...)))))...)))).))..((((((((.....)))))))).. (-23.18 = -22.38 + -0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:09 2011